XLOC_008945 (guca1c)


Basic Information

Item Value
gene id XLOC_008945
gene name guca1c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2884711 ~ 2903475 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017661
ATGGGCGCCCACGCATCCAACCTGGATGAGGTCTTGGCTGAGGACATGCACTACTGGTACAACAAGTTCATGAGGGAATCTCCGTCAGGCTTGATTACGCTGTTCGAGCTCAAAAACATGCTGGAGATGCAGGGCATGACGGAGGAGGCCAGCAGCTACGTGGACCAGGTCTTCTTCACGTTTGACATGGACGGGGACGGCTATATAGATTTCGTGGAGTACATCGCTGCTGTAAGTCTGCTCCTGAAAGGAGAAATCAACCAGAAGCTGAAGTGGTACTTCAAACTCTTCGACCAGGACGGAAACGGCAAGATCGACAGAGATGAAATGGAGACCATATTCAAGGCCATCCAGGACATCACCCGGAGTTATGAAATCCCTCCAGATGACATCGTGAGCCTGATCTATGAGAGGATTGATGTTAATAACgaagGTGAGCTGACGCTTGAGGAGTTCATCACAGGAGCTAAAGAGCATCCAGACATCATGGAGATGCTCACTAAGATGATGGACCTCACACACGTCCTGGAGATCATCGTCAACGGACAGAAGAAAAAGAAGGAGTGAAGCTGTGGACGGGAACAAGAAGAAgaacaaaaagaagaagaagaagagatgaCCCAGTCTGTAAAGCCCAAAAACAGACTGGACAGTGGATGAAACAAGGTGGACAAGctcaatcatcatcatcatccctcAAACACTTTCTCTTTGCGTGTGTTTGTGCCTCCAGATATCTCGGTTTCCCTTCTACGTTCCACTTCAACAGCTCTGAAAAATGTGCTGAAATGACACAAGTCATGTGGGAGTTTGGGAGCGTGAGCTTACCAACGGACATGTGTAGTGGAAAAACAAGTCGCAGTTTaaagtgtatgaatgtgtttgcATTGGAAGCGCAGTCACACATTTTAAAGGTCTActtaagtgctttgaaatgtgcatttgttTATAAACTTGATTtgtgatgtaatctcaactgaaggGTGGAGAGAGGCTGGGACAGAGTAGCCCcgccccctttaaaaaaacagccaatgacgtttcattttataacagtgggagtggttgagctcaagaaCATCAAATGAACAGATAATGAgcgggcggggcatgtcagacacctGAGAGCATTCGACTGGTCAGGAGATTTGATGAGAAGCTGAAGTATGACATCATAAAAATCCaagatccatttaggcggaagtgacgaACTGCAAACTTTGGGTGTTTATATCccctaaatgtgaattttgttactgtttgggagcacactagcttataaatatccatactgatgctaacatctaaaacttttatgttcatttcatgggacttttaatggaaataaaaatcTCTAGAAATAGTAAAGCAATAGCTATACTGAAAGTACTTTCTGGTCGTTGGATCTGATTAAAAAGTTAACTCCTCGTGAAGTTAGCTTCTCAAATCTAAGTTTACCGACTGGTAAACCATTCGTACAAGTCATGAGTTTGATTGTATCATCCAGATACTGTGTATAAAGGGGTCGGTATTATAAATTGtacagtttttgttgttgttgttttgttatacTGTGTGTACTGTAATCTTCATTCTGAATCGACAACTCTAAAGTTCCTACTTTgccttatataaataaatgcaatgtactgCTTCTTTGGACTGCAGTTTCCTGTCTTCACTGTTACTATGGCTTTTCCTTTTAGgattaaataaaccaaaatgtGTGTATCACACCGGGTgctgctcctgtcagctaagaacaggaaactgaggctacaattcacacaggctcaccaaaactggacaatagaagattggagaaacgttgcctgatctgTTAAGTCtagatttctgctgccacattcagatggtcgggtcaaaatttggcatcaacaacatgaaagcatggatccatcctgctttgtataagcagttcaggctggttgtggtgtaatggtatgggggatgttttcttggcacactttgggtccattagtaccaactaagtattgttgctgaccatgtccattcctttatgagcAGTGTCTCATCTTGTGtctgctacttccagcaggataacgcaccacgtcataaagcgcgaatcatctcagactgttttctaGAACATGACAAggtcatgacaatgagttcactgtattcaaatggcctccacagtcagcagatctcaatccaactgagcacctttgggatgtggtggaatgagagattcacatcatggatgtgcagcaactgcgtgatgctatcatgtcaatatggagcaaaatctctgaggaatatttccagtgccttgttgaatctctgccatgaaggataaAGGCagctctaaaggcaaaagggggtccaacccagcactagtgaggtgtacctaataaagtggccggtgagtgttaaTATTGCAGTACTgtgcaataaaaatacatttgttgagaaacaaacacacatgcagtatTTTGCTATCACATAACACATAACActtcataaatcaaactttcataCACATACCTTTCCATAAATTGCCACCTGCAATGTTCTATGAATAAACACATGAGAAGAAAAGTGACAGGTTCATCGCTTTTATGACTTAAAAACAGACATGAACAGTAATAATGATCAAATAAATcctaaaaaaatagtttaaaagacATCAGTTTTCAATGTACATCACTCAACAATGACTTTAAAGCAACTTTAGGGATTTGAACCTTGAACCTACTCAAATCGCTGCAAAGATTCTTGTAGactaaaaggaaaaagaaaaatcgGTTTTATTAAATTTTCATTAAGAAAAAGTAGATAAGCAGCTGGAAGTCCGTCCTCATCTGCGCTGTTTTCTTGAGCCCTTGAATGGATCAAACTCATCCTGAGAGAAGAACAGAAGGCAAAGATCAACTTGGGAACAATTACAATACATTTAGTAGTGATGCACACAATTTTCAGCCACCAAAAATGATCGGTTTCGTGATAATTTTACtggcttatgtgtgtgtgtctgtgtgtgtgtgagtgtgtgtgttgtaaagaGTATAAATAAAGTTactgaattaaatttaaaaaatcttataaaATTAGATCATTTAACTTACTAAAGCTAGCTAAGTAACTAAACTAACtaaacaatgttttaattaaatcaatataaattaaataaatatgaattaaattaaatcaatataaattaaattaaagcataTTCAAAATCTTCGGTTTATGCCCAGAATTTTCCTTTTCGTTGCATCCCTACACATCAGGATTGTTTATGAACCTTACCTCACCGCTGTCTTCATCAATGCACACTCCTTTTAAAGACTGGCTCTGGGACGCCCTCTTACTGTCACTTAATGAAGGCAGCCTATTGTGAAATAGATAACAAAAAATTAGGCCTAGCTTGAAGGATTAGGGCTATGGGGAAGGGCTAGttagcccttgaaactgagatttttcaggaccacactcgaaaccaagtaGTAAGACAATTTCCTAGAATACATCATCTACAACGGCAGTACTACTGCACACGGAAGTAATGAGGtgcacaaattagcatttttttgtcattattattaatgtttataacaaacaagcacatgttttaaagggcacctatttgacccctttttaaagatgtaatatgaatattatggttcttctgagtgcgccagtttaggttcagttcaaaacacagttcagattttttattgtgttaaaaGTGTtatgttgggggcgtgtacaaatgttgttgttttaggggcgtgttgcttcacatgaaaattagtttcgaattcccgcccaacttaacaagggggcggagccaagagctcccctgcttcgtgtatggcaacagacaggcagacagagagaagctacatgagtgagaggaccagcattcagctgtacatgtacGACCTGGACTgtgacacagaccaagcagagagtactaTTAAGGTATCAATATTCCTAATGTTTCCGAATGTGTCAGACTTAtggttacaaaatcatttgtgtctttgtatagttttacagccgctGTGTAAAGATGTATGTGTCATCTGTACAGGGATGTaatgattaaccggtttcactaacAACATTTAaattcgtcacggttaattaatcgtgaAGGCTTCTCAAAACTGTGTTTCTGAACGGAACAAAACTgcggcaactaaacaaagttgtGCCAACTGTgagctagtttaaagttccgagcttgtacaccgagactaataaccacgcacactggattaactttgactgaggctataaccacggcaagttcgttatttccaatggagagatgCGCACGTGAGGCAACGCGCTCGCACTTTCCAGCCGCACCTAATTGAGATGATAGGGAGCTTCAGTGGctgcgggaaatgcaaacggctgatgTTTAAgaaagacgcaatgaaaagtccacagatttgcaaacccacctaaagttacaaattaaTGCCGCCGATgggagcgatcatgtggtgaatgttgatccgccagccaAGATCAATCCAGTGTTTTCGGACAGAGTGCTGAAGACTCGGTAGATCAGCTGTTTTCAATGCCCCGAATCTCGATACaatgcattcactgcgtgttcagtgcAATTGgacgctaaatgtaaaatctctgtAGCTCATTCACAGGAAGACGATAAAGGCTCTTGTGTTGAGCCTAataaggatgctttcacacttggttcatttgcctggaccgtacccaagttcgattgtctccccctgccacctccttggttggtttgtgttcacactgtctattttccttctgaaccccggtacgctcgagctgctgttttgtttacggccgttgctaggtgacggccacgcaagcaagcgccgaaatggaaagactcccgcacatcgcggtcattctgcttttactgaaagcttttggacatacagaaagcgacttgcgttcatctgccgcaaaaatattacgcacattcagaacatcacacagtgtctgcaggagctgtttttggaggagacaagcagacatcactgtgtttgccctggctcagtcccgcgcgtgtcaccaaggtacgaaacaagacacacacatgaacaaacgaacgttatgaaaacaatagtttgttgtacagttggcggtttactatagttcacttccgttatttggcacgattgcattcacatctgaAGTGAACCAGTGATACCAGAGTTCGCATAacccgtaccccagaccacctctttcaggcggactcgggtacacTTCACGGGTCCGCACCTGGGTTCAGAAGAcgcattcacactagctaaacgtaccgtactatgacgtcaaacgaactcGTGTGCGGACCAAAAGAGttagtg

Function

symbol description
guca1c Enables calcium ion binding activity and calcium sensitive guanylate cyclase activator activity. Is expressed in cranial nerve II and eye. Orthologous to human GUCA1C (guanylate cyclase activator 1C).

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0030250 guanylate cyclase activator activity molecular_function
GO:0008048 calcium sensitive guanylate cyclase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030829-1 Enables calcium ion binding activity and calcium sensitive guanylate cyclase activator activity. Is expressed in cranial nerve II and eye. Orthologous to human GUCA1C (guanylate cyclase activator 1C).

Ensembl:

ensembl_id ENSDARG00000030758

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017661 True 5369 mRNA 0.42 4 2884711 2903475

Neighbor

gene id symbol gene type direction distance location
XLOC_008944 ankrd49 coding downstream 26750 2850965 ~ 2857961 (-)
XLOC_008943 CABZ01086041.1 coding downstream 43034 2820768 ~ 2841677 (-)
XLOC_008942 NA coding downstream 68569 2813516 ~ 2816142 (-)
XLOC_008941 tgfb1a coding downstream 81398 2776506 ~ 2803313 (-)
XLOC_008939 ppp5c coding downstream 130655 2727670 ~ 2754056 (-)
XLOC_008946 CABZ01086029.1 coding upstream 14782 2918257 ~ 2931021 (-)
XLOC_008947 zgc:153184 coding upstream 28407 2931882 ~ 2973368 (-)
XLOC_008948 mlnr coding upstream 72645 2976120 ~ 2985599 (-)
XLOC_008949 fndc3a coding upstream 84118 2987593 ~ 3078600 (-)
XLOC_008950 slitrk5a coding upstream 185737 3089212 ~ 3096150 (-)
XLOC_008940 CABZ01086049.1 non-coding downstream 148213 2736383 ~ 2736498 (-)
XLOC_008933 NA non-coding downstream 258783 2618279 ~ 2625928 (-)
XLOC_008932 NA non-coding downstream 273541 2598804 ~ 2611170 (-)
XLOC_008928 NA non-coding downstream 556427 2323666 ~ 2328284 (-)
XLOC_008951 NA non-coding upstream 211862 3115337 ~ 3116262 (-)
XLOC_008952 NA non-coding upstream 256963 3160438 ~ 3162459 (-)
XLOC_008957 NA non-coding upstream 851091 3754566 ~ 3760957 (-)
XLOC_008970 NA non-coding upstream 1260103 4163578 ~ 4174873 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000154_00012002_00016527 GUCA1C coding CI01000154 null 11501 ~ 17607 (+)