XLOC_008946 (CABZ01086029.1)


Basic Information

Item Value
gene id XLOC_008946
gene name CABZ01086029.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2918257 ~ 2931021 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017662
atatatatatatatatatatattactatttttacaGAAGTGCATAAGACAATggttaacaaaacataaaacagcaCAAATAAAATTGATGTAGCCTACACAGTATGTGGTTATTACGTTACAGGTGTACAATTTTGTCGAGTACggtgtaaataatatatatataaagtttgtttattattttgtgattcacaagtgtttatttacggttgcgaattgcattatgagatgttggtctctgctctgtccacttttgatgctgATAATTCAGCTGTACTGTTTAACgaagtgacttttatttatttattttagtcgtttgaaataatataatgcacaagaaataataatatatagagaaataagtctgtaaaataacagaaaactacTGGCAGTTTATAAtgaggtttttgtagcataatatacaccACCAACACAGACAGTATATCAGCTGTATactattaaaaatgctaataaaagtcactttttaaaaaaacttttcaataTTAGATGGTATTGAAAGAGAGATCAAttccaataatgcaattcaaaagcagaaacaaacggggaaacatcaaaaataaagacataaatcacaaaatatggaaaacagctcatatatggattttttttactgtgtagatATGGATTTCTCAATTAATCTATTGAACATGTTGATGAAATGCATTGATATCACTCATTTATATAATGTCTCAGTATATGAATACGCATTTACATTGCAGAAAACTGATCTCTTGGTTTAGTTTGACCTGTTTGTctggatttgtgtgttttcagAGTTTGGAGAATAATGTAGAAGGGATTGAACTGGATGGAGTTTTTGTTGATCATAACGATCCTTCACCTAAAACCTCAAAGTGTCGGCGGGAGCTGCAGAGCCTGAAGAAAGACCTCAATGAGGTGGTGGTGTGGAAAATCAGATTATGGATGGTGATACTTCTCATCGTCAGTGCCATAGTTGTGGTTATTGCGACCACAGTCGTTGTGTGTGCAGTGGAGGACGACGTGGATGAGACATATGACAGATCCTCGTTTGTGGTGCCGCGTCTCTTCAGAGGGAACTTTACTCTGGAGAGCAGCAGTAGTTCAGCTTTAGACCAGCAGATGCTGATGGAGCAGCTGAAACAGGAGGTCACCGCCGTCTACAATTCTTCTGCTGCTCTGGAACGCTACTTCAGCGATGTGACCATCAGCAGTTTCCAGGACTCCACAGCCCAGTTTGAGCTCCAGTTCATGATGCCGCCAGAAAATGAGGAGCTGGTTCGATATACTTTGAGTGTAAAGATTGTGAAGGGTGTGCTTCAGCAACACTTTTACGATCAGGACAGCAGAGAACAGCTTAGTGTCATCCCAACATCGCTCAGGATGGAAGctttttaagcAGAACCTGAACTCCAGGATCCTGAACAACTGGATGTTTGAAGTTAAACCACTGGTAGCCCAATCTAAAATGAAAACAATCGACTTGtcacattttaattaaatccTCTTTCTCTCTGACAATCATCTGTTAATATtcttataaaaataattagtagtaattgtaattatttcagCTAACCATCCATACTTGTTCAAAACAACTGTTGTTTTAAGTCAgctatgtttttgtatgttgttattattattattacagtagaTGGATGTGGTGCACTGTTTAATGATGTTCTCTTCTGTGGTTCTGTTTTCTTATTGAATTAACTtctttaatattttagtcaggtaattattttttaaatgcttttttatgtaagttttttttataataaaaaagttttaaagttttaaagttttataataaataatatacatacatatatacatatataaaaggCTCAATGGCTTCATGATTCAACCACCTTTCACATTCAGCACTTTTATAggagtatcattcattcattttccttcccctttatcccctttattaatcaggggtcgccacagcggaatgaaccgccaacttatccggtatatgttttatacagtagatgctcttccggctgcaacccatcacttggaaacatccatacacactcattcactctcatacactatggacaatagtGTACCTTACCTAAtacaccaatagcgcatgtgtttggactgtaccggagcacccagaggaaacccatgccaacacggggagaacatgcaaactccacacagaaatgccaactggccctgccgaggctcgaaccagcaaccttcttgctgtgaggcgatcgggctgcccactgcgccaccatgacgctgATTAATATAAAGTGGTGAAATCATTGTTCTTTGCTGC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117419

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017662 True 2307 lncRNA 0.37 6 2918257 2931021

Neighbor

gene id symbol gene type direction distance location
XLOC_008945 guca1c coding downstream 14782 2884711 ~ 2903475 (-)
XLOC_008944 ankrd49 coding downstream 60296 2850965 ~ 2857961 (-)
XLOC_008943 CABZ01086041.1 coding downstream 76580 2820768 ~ 2841677 (-)
XLOC_008942 NA coding downstream 102115 2813516 ~ 2816142 (-)
XLOC_008941 tgfb1a coding downstream 114944 2776506 ~ 2803313 (-)
XLOC_008947 zgc:153184 coding upstream 861 2931882 ~ 2973368 (-)
XLOC_008948 mlnr coding upstream 45099 2976120 ~ 2985599 (-)
XLOC_008949 fndc3a coding upstream 56572 2987593 ~ 3078600 (-)
XLOC_008950 slitrk5a coding upstream 158191 3089212 ~ 3096150 (-)
XLOC_008951 NA coding upstream 184316 3115337 ~ 3116262 (-)
XLOC_008940 CABZ01086049.1 non-coding downstream 181759 2736383 ~ 2736498 (-)
XLOC_008933 NA non-coding downstream 292329 2618279 ~ 2625928 (-)
XLOC_008932 NA non-coding downstream 307087 2598804 ~ 2611170 (-)
XLOC_008928 NA non-coding downstream 589973 2323666 ~ 2328284 (-)
XLOC_008952 NA non-coding upstream 229417 3160438 ~ 3162459 (-)
XLOC_008957 NA non-coding upstream 823545 3754566 ~ 3760957 (-)
XLOC_008970 NA non-coding upstream 1232557 4163578 ~ 4174873 (-)
XLOC_008973 CU467614.1 non-coding upstream 1434137 4365158 ~ 4365272 (-)

Expression


Co-expression Network