XLOC_008947 (zgc:153184)


Basic Information

Item Value
gene id XLOC_008947
gene name zgc:153184
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2931882 ~ 2973368 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017663
GTTGAAGCTTTATAACCTGATCACTGTCTAGTCAGGGTGTTTTGTGACACAGCCCGTGTGTTTGCCGTGACTTAAAACTCTTCGGTTTGACATCGTTGAGGAGATGTGGACAGGTTTTACGGATTTTACTCAGCTTGGTTGCGCTGTCAGCTCCTCATAGTGTGTCTTACTCCGTCGTTTGCGTTTTCAGTTCACAAGTCTGCGTGTTTCTGACTTGAAGGAACATAAAGCGAGGTGAAGATCAGCGCGGAGAAACCCGTCTGGAGATGGAGgAGGAAGCTCCAGTCAAGACGTCGGTGGCCCAGTTGGCTGGAAAACTCAAAGCTCATGCGCTGCCAATGCCAGGAAACAAGGAGGTGAAGTCTATGAGGAGACCCCCATGTTCACTGGCCATTAATGACCAAAGAGATGAAGAACTTGAAGAGAAGTCGTCTGTTTGTCCTCATCCTGCCAAGATCAAGATGAAGAGTTCACCGCTCATAGAGAAACTACAGGCCAATCTCGCTCTGTCTCCAACCGTCCTGCTCTCTCCACCCAAAAGCCCAGAGTCCAAACAGCCGCCCTCTGCGTCCATCAGCCCGTGCAGTGTCGTGAGCTCCACCCTGCAGACCCCTCAGCTGTCCTGCGAAGATGAAGCGCCGGTCAGCTTCGAGCAGCCGGTGGAGGGCACACCACTGCCCAGCATCAACAAgAGTCGAGCCAGACTGTCGTTCAAGCGCCGGCTGCCCACACGCCTGCACAGGAAATCAGCAAGCGAAGAAGCCAAAGTGCAAGAGGACAACAATTCTCAACGCGAAACCGAAAACCCACAGCAGAATGGAGAAGATCTGATCTGTGGGCGTCTGCAGGAGGACAACGAAGAAAAAGCAAACACTGCTGACTCTGCTCGAACCAGCACAGAGGACAGACAAAAGCAAGAAGGCCAAGAAACAAATGCAGGAGACCAGGAGGAGTGTGAAGCTTCTGACTGTAAACCAGAACaagaaaaagaagagagagaagAGACGGAGGAGGACAGGACAGAAGTGAAAGAGGACACGGCGGAGAAAGAGACAGAGTAGATGAAATAGGTTGAAGGTCATCAAATGTGGAGCGCTTTTGGTTTTTTGCTTTAATATactcaacccgggctcattgtgggattgtagtcccgcggacgtttctggagactgcggaatacgtcccggcgggtacgtacggctgcagtttttgttttcgcgaatccacgagaggccgctgttgtgcgctttttcgcatctcagacgcctctcgcgagtgcggttcgcgcccgcgctgttctcgcgtgaacccaccagaggccgctgtccgactgaccggataaTTGACTACGCGACCGcccaatcggccgacccgccctcctccttctctgaacccaaccaattttaccgatcgacccgcctgcccgctcgcttccctaaacccgagcaacagtttacaaaagccgtccaaaaaaataaaagccctgattatttttttctaccgtgttttcagatttcaccgcgtcctcaccctgtcacgaaactcgttcacttcatttttgggattctgtttttgtcttacctgattgctgtaactgctcttccccggactcgaaaccggtcgccgtcgtcgactcctctctgcatctcgagcctgccgacgtacacggtgagctgagtggacaaacgggttgcagtggggaagccctccacaaggaggtaaggcaaccgtgaaagggaacagcgtcacaccgccccgcagcgttcgcttgaaaaaaataaacgcggccgtacgtacctcccgggacgtattccgctgtctccagaaacgtccgcgtgactacattttcagaatgagcttgggttgaatataCTCCAAGTGCTGCTTTAGACAGTAGTGATACTGACAGACTTCTGTTTAATTATCAGAGATAATAATTCACATTTAGGTGGACTTGCAGAGACCTGACAAAAATATCCGTAAATAAGCGgttttgcatattttgtgattcatgttttagtttttatttaaaaacaggcTCTTTGAAAGAGACAGAAtgtttgggtgctttcacacctgccttatttagttggattgaatcgcactagagttcgtttccccttttggtgcggttcgtttgggcaggtgtgaatgcagacGTCGTATTCTTgtgtgcaccaaaagcggaccaaaaaagcgtaccgagacctgcttgaagaggtggtctcggtacgctttcaaacgagaaaaatgagaaaatgagccgaactaaaacagacccaaacacaaaaagtactgcgccttttggactaatccagctgtcgtaggctgatgcgctgtgcattatgggatatggaggaaaaatatttgatgATAGCGCTTTaccaatagagagagagagagagagagagagagagggagagaggggaaaacattacctgatggatcattggtaatatttccgcaagttgaccatgtcgcagtttagctaaattaattcacgcctcctcctgaagtgacgtgagatgcattaaaacattgttttccagccgcggccatGCTTCAttctcgtaatgtatagtttgccTAAAGCAGGGATACTGCtttagaaaagaaaatgaatgaataaatgatgaactaacaatatatgtatatgtatgtatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatata
>TCONS_00017664
AGAAAATCATTTGGTTGAGACtgagtttgtgtttgtttcaggAGGAAGCTCCAGTCAAGACGTCGGTGGCCCAGTTGGCTGGAAAACTCAAAGCTCATGCGCTGCCAATGCCAGGAAACAAGGAGGTGAAGTCTATGAGGAGACCCCCATGTTCACTGGCCATTAATGACCAAAGAGATGAAGAACTTGAAGAGAAGTCGTCTGTTTGTCCTCATCCTGCCAAGATCAAGATGAAGAGTTCACCGCTCATAGAGAAACTACAGGCCAATCTCGCTCTGTCTCCAACCGTCCTGCTCTCTCCACCCAAAAGCCCAGAGTCCAAACAGCCGCCCTCTGCGTCCATCAGCCCGTGCAGTGTCGTGAGCTCCACCCTGCAGACCCCTCAGCTGTCCTGCGAAGATGAAGCGCCGGTCAGCTTCGAGCAGCCGGTGGAGGGCACACCACTGCCCAGCATCAACAAgAGTCGAGCCAGACTGTCGTTCAAGCGCCGGCTGCCCACACGCCTGCACAGGAAATCAGCAAGCGAAGAAGCCAAAGTGCAAGAGGACAACAATTCTCAACGCGAAACCGAAAACCCACAGCAGAATGGAGAAGATCTGATCTGTGGGCGTCTGCAGGAGGACAACGAAGAAAAAGCAAACACTGCTGACTCTGCTCGAACCAGCACAGAGGACAGACAAAAGCAAGAAGGCCAAGAAACAAATGCAGGAGACCAGGAGGAGTGTGAAGCTTCTGACTGTAAACCAGAACaagaaaaagaagagagagaagAGACGGAGGAGGACAGGACAGAAGTGAAAGAGGACACGGCGGAGAAAGAGACAGAGTAGAT

Function

symbol description
zgc:153184 Predicted to be involved in DNA replication-independent nucleosome assembly. Predicted to be active in nucleus. Orthologous to human RCSD1 (RCSD domain containing 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-136 Predicted to be involved in DNA replication-independent nucleosome assembly. Predicted to be active in nucleus. Orthologous to human RCSD1 (RCSD domain containing 1).

Ensembl:

ensembl_id ENSDARG00000099645

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017663 False 2728 mRNA 0.48 6 2931882 2973368
TCONS_00017664 True 832 mRNA 0.52 5 2933547 2954443

Neighbor

gene id symbol gene type direction distance location
XLOC_008946 CABZ01086029.1 coding downstream 861 2918257 ~ 2931021 (-)
XLOC_008945 guca1c coding downstream 28407 2884711 ~ 2903475 (-)
XLOC_008944 ankrd49 coding downstream 73921 2850965 ~ 2857961 (-)
XLOC_008943 CABZ01086041.1 coding downstream 90205 2820768 ~ 2841677 (-)
XLOC_008942 NA coding downstream 115740 2813516 ~ 2816142 (-)
XLOC_008948 mlnr coding upstream 2752 2976120 ~ 2985599 (-)
XLOC_008949 fndc3a coding upstream 14225 2987593 ~ 3078600 (-)
XLOC_008950 slitrk5a coding upstream 115844 3089212 ~ 3096150 (-)
XLOC_008951 NA coding upstream 141969 3115337 ~ 3116262 (-)
XLOC_008952 NA coding upstream 187070 3160438 ~ 3162459 (-)
XLOC_008940 CABZ01086049.1 non-coding downstream 195384 2736383 ~ 2736498 (-)
XLOC_008933 NA non-coding downstream 305954 2618279 ~ 2625928 (-)
XLOC_008932 NA non-coding downstream 320712 2598804 ~ 2611170 (-)
XLOC_008957 NA non-coding upstream 781198 3754566 ~ 3760957 (-)
XLOC_008970 NA non-coding upstream 1190210 4163578 ~ 4174873 (-)
XLOC_008973 CU467614.1 non-coding upstream 1391790 4365158 ~ 4365272 (-)

Expression


Co-expression Network