XLOC_008949 (fndc3a)


Basic Information

Item Value
gene id XLOC_008949
gene name fndc3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2987593 ~ 3078600 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017666
CCTTCTCTGTTCATACTTTTCgccagcggatttgcaacgggtgcgggcgaaggatcgcgatgccgatgttgtctatcggacgaaccatacgtaatacgtacatagcagagcttgcaaaactgtgtttttttatcgacaacacaaacgttgtcaacataactcactggaaatccaaaatgcttccacaccggcgacttcattgaaagaggagagggtttaagctctgtcgacgggtctcctgcttctgcagtttgacaagcacttcaacaagcctgttactttcccgcttggcaagccaagctgacgtgacatgggggcgtggcagcatcgacaattctattttttgattcgataatcgaaattgagcataaatttcgatcgatttcgattaaaaatcgaaatcgtgacacccctgtTACTGAATAACCATCTCTTTTTCGCTTAATATTCTAGTTAGAATTAAACCGTGCCATGTGGAGAGCTGATGTTAGATGAAGGCAGCAGGAAGTTTagccttacattttttttttttttttgtcatcaagcCCTTTTAGGTTGGGTCGTTCAAATCAATACAGTTTATCTGTATTCAGCGATGTTGGCTGTCATTAGAGCGTTGTAGGTCATTTTATAGAGCAAGAGAATGTTTCCTTGAGGACTGAGCTAAATGGACTTTTCTTGTCTTCTTCAGGTAATCTTGGTGCAGGTAAACCCAGGAGAGGCCTTTACAATCCAGCGAGATGATGGTCAGTTTCAGTGTATCACAGGTCCTGCTCAGGTTCCCATGATGTCCCCAAACGGTTCAGTGCCTCAAATCTATGTGCCTCCTGGATACGTTCAACAGaTCATTGAGGAGAATGGCGTGAGGCGGGTGTTGGTCTTGCCTCAGACGGAGTTTCATCCGGGGGCCCATTCTCCGCTCCACCACGCGCCCCATCCTCCACCCCACACCCACCTGCAGGCCTTCATCCCGCACCCACACATCATGCACCCTCCCCCGCACCTGTACTCAGGCCTCGCTGGAGGAACCGGAGACATCCCCCAGTACATCTCCCAGTACCACCCAGCACACCCAGCCATCTACTCGGAGCAGGAAACTCACCCTCAACACGGCCGGGCGGCGTTCGCTCATCGAGATGAAAGGACTTGTAAAACCTACGAGCGTCTGCAAAAGAAGCTGAAGGATAAGCAGGGGGTGGGAGGTGGAGGTGGAGGCCTGGCGCTCTCCAAAGACAGTCCCCCTCCGTCCCCACAGAAGAACCTCGGGACACCCCCTGCAGGAGCAGCAGGAGAGCTCCAGAACGGGCTGGAGGGTAAGAGCAACGTGGATCAGGCACAGCCCAGCAACACCATCACCCGCCTGGGTAAAAGCCCAGTGAGAAAGAAGGAGGTGGAGCCTGGAGAACTGGACGAAGAAGCCAAGGCCCTTCAGGAACGATTAAACTCCATGTGCAAGCCAGTGGTGACAAACATCCAGGCCAGAGGGGCCAGTTTAACTTGGGTGTCCCCGTCGCGGACAGAAGGTGATGATGAGCCCAAAGAGGGAGAAGACGAGCCTGTGGAGCCCAACTTCACATATGAAGTCTCTATCTCTTACAACGGCAAAGATGGGAAATACAAGAGCGCCTACagTGGTGTGGAACTAAGTGCAACCTTACAAGACTTAAGACCAGCAACAGACTACCATGTCAGGGTCCAGGCGACGTGTAACTGTTTACAAGGCGTCCCATCAGAGGCTGTGAGCTTCACCACTCTGAGCTGTGAGCCTGACACTCCCAGTCCTCCCCGAAAGCTCAGCGGCACCAAGAGCAGCCTCGTCCTGCAGTGGAAGGCTCCATGTGACAACGGTTCCAAGATCCAAAACTATATCCTTCACTGGGACGAGGGGAAGGGAACGGATGCTACGTTTGTCCAGTGTTACTACGGCCCATATAAGCAGTACAGACTCACCAAACTCTCCACAGCTTCCAGATATTCCTTTCGGCTGGCGGCCAAAAACGACATGGGGGTCAGTGAATTCAGTGAAGTGGTGAACATCATGACATCCTGCAGTGTTCCTGCTCCCCCTCTGAGCCCTGAGTTGGTTCAGTCTGGGGTCACATGGCTATGCATTCGCTGGCACAGACCCGCCGGATCGCCCAAAGAAGACGACACCGGCTACGTGCTGGAGATGGAGGAGCAGGGATCCGGTTATGGATTCCAGGCCAGTTATGATGGAGAAGAGCTTTCACACACTGTCAGAAACCTCCACAGAAGCACCACGTACAGGTTCAGGGTTGTGGCCTATAACACGGAAGGGAAGAGTAACCCCAGTGCTGTGTCTGAGTTCACCACTGCTCCTGACAGGCCCAGCTGCCCGTGCAGACTCGCAGTGAAGGGAAAACCTCACCCGACCAGCTTCCGTCTGACCTGGGATCCTCCTAAAGACAGTGGTGGCTCAGATGTGACTAAGTATGTGGTGGAGCTTTCAGAAGGGTTAAGTGGTTCCTCCTGGAGTCAGGCGTACAGTGGTTCGGCTCTGGAGTGTGTTTGTGATGGTTTGAGCCCAGGATCTTCATATCAGGCCAGAGTTCACTGCATCAGTGCGGGAGGAGAGAGTCCGtTGACGGAGGCCTTGCAGGTCCAAACGCCACCAGTTCCTCCTGGTCCATGTCAGCCGCCCAGGGTCGTGGGTAAACCCAAAGCCAGAGAAGTGCAGTTACGCTGGGCGCCCCCACTGGTGGACGGTGGTAGCTCTGTGAGTTTGTACAATCTGGAGATGTTCGCGCCACAGGTGGACGAGGCCAGAGAGGTGTACCAGGGCTCTGAGCTGGACTGTACTGTGCCCAGTTTATTGCCAGGCAGGACCTACGGCTTCCGGATTAGAGCGGCCAATAAAGCTGGATATGGGCCTTTCTCGGAGCGCTCTGAGGTGACGACGGGCCCTGGGGCCCCAGAGGCATGTAGGCCCCCTCACATCACTTGTAAATCCCCCACGTGTGCTGTGGTCAGCTGGGAGGCTCCGGTCAGTAATGGGGCAGTGGTGTCAGAGTATCGTCTGGAATGGGGCGCAGCCGAGGGCAGCATGCAGGTGTGTTACAGCGGTGCCGCTCTCTGCCACGAGATGAGGGGTCTGCTGCCCGCCAACAACTACTTCTGCAGAGTCCAgGCGGTGAACGCTGCGGGCGCCGGCCCCTTCAGTGAGCTGATGTTCTGCCAGACGCCGTGTTCGGTGCCAGCGATGATCAGCAGCGTTCATGCGCTCCGAGATTCTGAGATGAAGATCCAGGAGCGAACAGCGGAAAgaggagaagaggaggaggaggacgaagaggaggatgaagagtCTGCCATGCTCTACTCTCCATCCACATGTCTGGGTCTGCGCTGGGAAGCTCCTTGTGACCACGGATCACAAATCACATCATATCTGATCGACCTGGGAGAGAAACAACCCATCCTCACCGGACCGGTGACCCAGTACATCATCCAGAACCTGCAGCCGGACACCACCTACAGGATACGGATCCAGGCTCTGAACAGTCTGGGCACAGGACCCTTTAGTCACACCTTTAAACTGAAGACCAAGCCACTGCCACCGCTGCCACCCCGTCTGGAGTGCACGGCGTCCAGTCACCAGACCCTCAGGCTCAAATGGGGCGACGGTCCGGCCAAAGCGCAGCCCACCGACTCCCTACAGTACCATCTGCAGATGGAGGACAAAAACGGGAGGTTTATATCCTTATATAAAGGACCGTGTCACACTCACAAAGTGCAGAGGCTAAATGAGTCTACCTCGTACGCTTTCCGCATCCAGGCCTTTAATGAAGCGGGCGAGGGGCCGTTCTCCAGCGTTTACACCTTCACCACCCCGCGCTCCCCTCCTGCACCCCTCAAAGCTCCGAGAGTGGAGCGTGTGGACGAGTCGTGTGAGGTCAGCTGGGAGACGCTGCCACCAATGAAAGGGGATCCAATCATCTACTGTTTGCAATGCATGCAGGGAAATTCAGATTTCAAACAGATCTACAAGGGCTCGTCCAGTTCCTTCCAGCTCCCCAACCTGAGCTCCTCCATGGACTACCGCTTTCGGGTCTGCGCCATCAGGCAGTGTCAGGATGCCCCAGAGATCATCGGGTCTTACAGCTCCACCGTCATCTTGCTGCCAGCCCGCGTGGACGGCCCCGGGCCCACAGGCTCCAGCGGCTCCAAAACAGCCGAAAACCAGAAACCAAAACGCAGCCTGACCGACGAACAGTTTTCCTTCCTGATCATCGCCCTGCTGGCCGTGACCTCCATCCTCATCGCCGTCGCTATACAGTACTTCGTCATCGAATGAGTGTCGTTCGTTTTCGTTTCTTTCTAGTTTCATCACGAAAACTGGAAAACAATTTTTTCGTCCAGTGGTTCCCGCTGTCTTGAGAACGTCCCGTATTTCCATCGGACTTATTTTGAAGGATCAGCAGTGAAGCTTAACGCTCGTCGTCGTCGTCTTTACACATTTATTCGTGTAGCTGTAGTCTTTATGTTATTTATATTCGTATAATTTCGTACGTTTGCGATTTCGGGACTTGAGGGCCAGTTTTGCGAACTGAACCCCCGGGAACGGTAAAATTTCGAGGATGTACGGTGGAGAACGCTGCAATTAGCGAACGTTGATTTAGCACTTTCAtaagaacgtttttttttttcgtttgtttttttttttttttgatgttcagAATGTGTAAAGGATGCAAAAATAACTAGAGAAATATGTTAGTATATTTTTGTACAGTATGATACGAGGACCTGAGATTCTGGATTAGTACGTTTTGGGGGGGGGCGGGGATTATGACTATGAATACCAAACTAACTCAACTTAATAGTTATTTTTACGATCATGTACGTTATTTAGTTCTACCGTAGCTTGTTTTTACAATCAAGCAGCTGCTTTCGCTCCGAAATATTGTCGTTCAGCACAAACAATGTAAGCTTTCTCGGAAACCTTTCCTTCAGTCGTTATCTTTGCACCTTagtgagaaaaaacaaacaatttacttATTGAATGCGTCTTGATCTCGTGAAGCGTTTTATGGATCATGTTCTCCAATTGTGCAAGCCCTCGATgtgtttttaagaaaaaaaataacgtaGTAACACAATAATGGTTCTTGAGACGGTTTATTCAGACAATAATCACGAAATCGTAGTGTTTTCTTAATTTCTctatttttttgttggttttttagttttagtaacCAAATTATCTCGTTGTGTGAATCGTTACTTTTAGCAATATTATTTTCGTAACCTCCAGAGTATGGATTATAGGAGTAAATATTCAGATATCGTTTCTCGTTTAAACAAAACCCCCacacatttgtgtttatttttttatacgcGAAGCATTTAAGTTAATTACGTCCAGCGGAGGAATTAAGAAAAGCGCAAGAAACGAAACACAAACTGCAGTAATGAAATTGTGTTACTTCCTGTGAATCGGAAATGTTTTGCCTTTTTCTCTGTGTGTTTAAAGTCTTGTGACTGATTATCAGTGCTGATTATCGATTCGGTCATGTCGTGCTTTGGTTTTGGGCATATGAGTGCTGTCAACAACCGTTACCAACTACAGGTAGCTTGCAAGAAGTCTTGGATGAAAATGAATTACGTGATTTGGTCTACTAGATATTCTGTCTTCTGTTTGTCATTGAAGGGaagtaaacaaaaagaaaaacgaaACAACTCAAATTCCTATTTTTGATAGTGATCAAATGTAATTGCGAAGTGTGCCATTTTAACGCCTCCCCACCATGATAACCTCTGGTTCTTGGGAGAAAGGaaaactacaacaacaaaaaaacaaacaaacaaaaatcaataaaatatgcacaaaaaatgagaccatttttatgtaattttaatgtTTGCAGTTACCTCATACACCGTACATTCCAAAATAACAATTTGTTAAAGTATACATGCTAGCAGACATATCACTTTAAAATGTTCGTTATGAGATAGGAGATGTATAAtcctatgtgtatatatatatatattaagagtgTCTGTATAGCCATGATATCTACAGACAGATCCATGCACAATAAAAGATTTATAATTCTTAATTGTATTCTTTTACTGtatgttgagtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgttcgtgcgtgcgtgcgtgtgtgtgtgtgtatgtgtatgagtgtgtatatacactacctgacaaaagtcttgttgtcgatcccagttgtatgAGCAACAACTCATTTGTTAAAGTGGTAGAGGGTGGATatttctgatggatcatctgGTGAGCTGCATCCCACTCATCAGCTGGACGTGGTCtcatgacaa

Function

symbol description
fndc3a Acts upstream of or within medial fin development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; cloaca; median fin fold; notochord; and tail bud. Orthologous to human FNDC3A (fibronectin type III domain containing 3A).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7015 Acts upstream of or within medial fin development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; cloaca; median fin fold; notochord; and tail bud. Orthologous to human FNDC3A (fibronectin type III domain containing 3A).

Ensembl:

ensembl_id ENSDARG00000105503

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017666 True 6357 mRNA 0.49 24 2987593 3078600

Neighbor

gene id symbol gene type direction distance location
XLOC_008948 mlnr coding downstream 1994 2976120 ~ 2985599 (-)
XLOC_008947 zgc:153184 coding downstream 14225 2931882 ~ 2973368 (-)
XLOC_008946 CABZ01086029.1 coding downstream 56572 2918257 ~ 2931021 (-)
XLOC_008945 guca1c coding downstream 84118 2884711 ~ 2903475 (-)
XLOC_008944 ankrd49 coding downstream 129632 2850965 ~ 2857961 (-)
XLOC_008950 slitrk5a coding upstream 10612 3089212 ~ 3096150 (-)
XLOC_008951 NA coding upstream 36737 3115337 ~ 3116262 (-)
XLOC_008952 NA coding upstream 81838 3160438 ~ 3162459 (-)
XLOC_008953 stoml3a coding upstream 167723 3246323 ~ 3252727 (-)
XLOC_008954 slc25a15a coding upstream 176454 3255054 ~ 3282220 (-)
XLOC_008942 NA non-coding downstream 171451 2813516 ~ 2816142 (-)
XLOC_008940 CABZ01086049.1 non-coding downstream 251095 2736383 ~ 2736498 (-)
XLOC_008933 NA non-coding downstream 361665 2618279 ~ 2625928 (-)
XLOC_008932 NA non-coding downstream 376423 2598804 ~ 2611170 (-)
XLOC_008957 NA non-coding upstream 675966 3754566 ~ 3760957 (-)
XLOC_008970 NA non-coding upstream 1084978 4163578 ~ 4174873 (-)
XLOC_008973 CU467614.1 non-coding upstream 1286558 4365158 ~ 4365272 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000092_00174874_00180333 FNDC3A coding CI01000092 null 174874 ~ 180333 (-)
rainbow trout (Oncorhynchus mykiss) fndc3a LOC106581557 misc NC_048591.1 CM023245.2 46579620 ~ 46761993 (+)