XLOC_008950 (slitrk5a)


Basic Information

Item Value
gene id XLOC_008950
gene name slitrk5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 3089212 ~ 3096150 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017667
ATgagggtgtgctgcagaggactgcagtgttttatcactcaccggAAAATGCATATCTGGATTCTGAAAATAATATTGCTGGTTGCCACATCTCTGAGTCTGGTTGAGCTGTATGACAATTATGGGGAGATCTGTAGGAATCTGTGCACTTGCGAGGAGAAGGAGGGCATTCTGACTGTCAGTTGTGAGAACAGGGGCATTGTGCGACTGTCGGAAATAAGCCCGGTGCATTTTTCTATGTACCATCTTTTGCTGACAGGCAATTTGCTGAAAAAATTGTCTGTCAACGACTTCATCAACTACACTGGAGTTACTATTTTGCATTTAGGTAATAATGACATTTCGGAGGTGGAGACCGGGTCTTTCAATGGCCTCCAGGGATTAAAGAGATTACATTTGAACAATAACAAAATAGACATTCTGAGGGACGACACTTTCGTCGGACTGGAAAGCCTAGAGTACCTGCAGATTGACTATAATTTTATTAGCACTATTGAACCTAATGCTCTGAACAGGCTTCATCAACTGACTGTGCTGATTCTCAATGACAACTTGTTGTCCGCTCTGCCCACAAACATTTTCCGGAATGTGCCCTTAACGCACCTGGATCTAAGAGGCAATCGCTTAAAAAGTTTCCCTTACATCGGCCTTTTGGAGCATATGGACAAAGTGGTGGAATTACAGCTGGAGGAAAATCCGTGGAACTGTTCTTGCGAGCTGATCGCGCTGAAGGCTTGGCTGGAGAGCATCGCCTACACTGCTCTAGTGGGGGAGGTGGTTTGTGAGACTCCATTCAGACTCCATGGCAGGGATCTGGACGAGATCTCAAAGCAGGAACTGTGTCCCAGAAGGGCCATTTCAGAGTATGAGATGCGTCCACCTCCCCCGCTCAGCACCAGCGGCTACTTCCAGACCACACCGGCAGCTGTTACGGCGTCAGCCACGTCTTCAGCCGTGCTGAGATCCTCATCGAGGCCCACCAAGGGTCCCCGCCAGTCTAGCAAAACCAAGTCCAAGCCCACATCTCGAATCCCAGCCAACCCCTACAACTACGGACCCATCATTGGTTTTCAGACCAAATCCCCCGTGCCTTTGGACTGCCCCACCACCTGTACATGCAATCTGCAAATCTCCGATCTGGGGCTAAATGTGAACTGCCAGGAAAGGAAGATCGAAAACATATCAGATCTAAAGCCCAAGCCATACAATCCTAAAAAGATGTACCTCACTGGAAACTACATCCCTGTGGTACGCAGATCTGATTTTGTGGAGGCCGAGGGATTGGATTTATTGCACCTGGGAAACAATCGGATAGCAGTCATACACGACAGAGCCTTTGGGGATTTAATTAACCTACGTAGGCTGTACTTGAATGGCAATTTGATTGACAGGCTCACCTCAGATATGTTCTTTGGGCTAAAGAGTCTGCAGTACTTGTATTTAGAATATAATAAGATTCGGGAGATTGTAGGCGGCACTTTTCGCTATGTGCCCAATCTCCAGCTACTGTTCCTCAATAACAATCTTTTAAAAACGTTACCCGGAGGGATTTTCTCCAGTCTGTCTCTGTCCCGCCTCAATCTCCGCAGCAACCACTTTCAAAACCTGCCTGTGAGTGGAGTTCTGGACCAGCTGAAAGCTCTGGTTCAGATTGACCTGTTCGAGAACCCTTGGGATTGCACCTGTGACGTGGTTGGCATGAAGATCTGGTTGGAGCAGCTGAATTCTGGAACGGTGGTCAATGATGTTAAATGCGTGACACCTAAGCGGCTTGCGGGACAGGATATGCGGGTCATCCCCTCTGAGCAATTATGTCCAGACTACTCTGATGTCATCGTGTCCACCGTAGTTCCTTCCGAGGAGCCTTCGGCAGACAGGATCACTACCACAGAGACGCCCCAAAGgtttaacaccacttccagcaatGTTCCTTTGTCTGTTCTCATTCTGAGCCTCCTTCTGGTTTTCATAATGTCCGTGTTTGTGGCAGCCGGCTTGTTTGTGGTGGTAATGAAGAGGCGCAAGAAGTCTCAGAGTGACCGTACCAGCACAAACAACTCAGACGTGAGCTCTTTCAACCTGCAGTACAATCTCTATAGCAATCGTTCCATCCCCAAAGTCAAGCCCGCAGCGGGGCTCGTCTATGAGTACATTCCCCATACATTAGGCCACATGTGCAAAAACCCAATCTACAGGTCCCGCGAAGGGAACGCTGTAGATGATTACTCGAATATGCACGAGCTCAAGGTCACCTACAGTAGCAATGTAGATGAGGACCAGGAGGTCTCCTTGAGGAACCAAAAGTACACAGTGAACGTCATCGAACCTCGTGAGCAACCTTCTCCTGTTCAGGACACGGAACACTTCTTCAGAGGGGTCTTGGAGCCGGATAAGTCTCCAGCGACTGCTGGTGGCAGATTTGAATATAAGTACTCTGGCCCCGTCCCATACACATACCAACCAAACTTCGACGTCAGGCGCCAGTTCTCACATCCCGAAGGATTACGAGAGACTATGCTTTATGGTACGATGCCAAGTACTGTCTTTGTGGAGCCCAATAGAAATGACTATTTGGAATTAAAGGCAAAACTTCAAATAGAGCCGGACTACCTCGAAGTTCTTGAGAAACAGACAACACAGAGCCAGTTTTAA
>TCONS_00017668
cattactgctgctCTGGGCCATTCCTGCACAAGAAAATGCATATCTGGATTCTGAAAATAATATTGCTGGTTGCCACATCTCTGAGTCTGGTTGAGCTGTATGACAATTATGGGGAGATCTGTAGGAATCTGTGCACTTGCGAGGAGAAGGAGGGCATTCTGACTGTCAGTTGTGAGAACAGGGGCATTGTGCGACTGTCGGAAATAAGCCCGGTGCATTTTTCTATGTACCATCTTTTGCTGACAGGCAATTTGCTGAAAAAATTGTCTGTCAACGACTTCATCAACTACACTGGAGTTACTATTTTGCATTTAGGTAATAATGACATTTCGGAGGTGGAGACCGGGTCTTTCAATGGCCTCCAGGGATTAAAGAGATTACATTTGAACAATAACAAAATAGACATTCTGAGGGACGACACTTTCGTCGGACTGGAAAGCCTAGAGTACCTGCAGATTGACTATAATTTTATTAGCACTATTGAACCTAATGCTCTGAACAGGCTTCATCAACTGACTGTGCTGATTCTCAATGACAACTTGTTGTCCGCTCTGCCCACAAACATTTTCCGGAATGTGCCCTTAACGCACCTGGATCTAAGAGGCAATCGCTTAAAAAGTTTCCCTTACATCGGCCTTTTGGAGCATATGGACAAAGTGGTGGAATTACAGCTGGAGGAAAATCCGTGGAACTGTTCTTGCGAGCTGATCGCGCTGAAGGCTTGGCTGGAGAGCATCGCCTACACTGCTCTAGTGGGGGAGGTGGTTTGTGAGACTCCATTCAGACTCCATGGCAGGGATCTGGACGAGATCTCAAAGCAGGAACTGTGTCCCAGAAGGGCCATTTCAGAGTATGAGATGCGTCCACCTCCCCCGCTCAGCACCAGCGGCTACTTCCAGACCACACCGGCAGCTGTTACGGCGTCAGCCACGTCTTCAGCCGTGCTGAGATCCTCATCGAGGCCCACCAAGGGTCCCCGCCAGTCTAGCAAAACCAAGTCCAAGCCCACATCTCGAATCCCAGCCAACCCCTACAACTACGGACCCATCATTGGTTTTCAGACCAAATCCCCCGTGCCTTTGGACTGCCCCACCACCTGTACATGCAATCTGCAAATCTCCGATCTGGGGCTAAATGTGAACTGCCAGGAAAGGAAGATCGAAAACATATCAGATCTAAAGCCCAAGCCATACAATCCTAAAAAGATGTACCTCACTGGAAACTACATCCCTGTGGTACGCAGATCTGATTTTGTGGAGGCCGAGGGATTGGATTTATTGCACCTGGGAAACAATCGGATAGCAGTCATACACGACAGAGCCTTTGGGGATTTAATTAACCTACGTAGGCTGTACTTGAATGGCAATTTGATTGACAGGCTCACCTCAGATATGTTCTTTGGGCTAAAGAGTCTGCAGTACTTGTATTTAGAATATAATAAGATTCGGGAGATTGTAGGCGGCACTTTTCGCTATGTGCCCAATCTCCAGCTACTGTTCCTCAATAACAATCTTTTAAAAACGTTACCCGGAGGGATTTTCTCCAGTCTGTCTCTGTCCCGCCTCAATCTCCGCAGCAACCACTTTCAAAACCTGCCTGTGAGTGGAGTTCTGGACCAGCTGAAAGCTCTGGTTCAGATTGACCTGTTCGAGAACCCTTGGGATTGCACCTGTGACGTGGTTGGCATGAAGATCTGGTTGGAGCAGCTGAATTCTGGAACGGTGGTCAATGATGTTAAATGCGTGACACCTAAGCGGCTTGCGGGACAGGATATGCGGGTCATCCCCTCTGAGCAATTATGTCCAGACTACTCTGATGTCATCGTGTCCACCGTAGTTCCTTCCGAGGAGCCTTCGGCAGACAGGATCACTACCACAGAGACGCCCCAAAGgtttaacaccacttccagcaatGTTCCTTTGTCTGTTCTCATTCTGAGCCTCCTTCTGGTTTTCATAATGTCCGTGTTTGTGGCAGCCGGCTTGTTTGTGGTGGTAATGAAGAGGCGCAAGAAGTCTCAGAGTGACCGTACCAGCACAAACAACTCAGACGTGAGCTCTTTCAACCTGCAGTACAATCTCTATAGCAATCGTTCCATCCCCAAAGTCAAGCCCGCAGCGGGGCTCGTCTATGAGTACATTCCCCATACATTAGGCCACATGTGCAAAAACCCAATCTACAGGTCCCGCGAAGGGAACGCTGTAGATGATTACTCGAATATGCACGAGCTCAAGGTCACCTACAGTAGCAATGTAGATGAGGACCAGGAGGTCTCCTTGAGGAACCAAAAGTACACAGTGAACGTCATCGAACCTCGTGAGCAACCTTCTCCTGTTCAGGACACGGAACACTTCTTCAGAGGGGTCTTGGAGCCGGATAAGTCTCCAGCGACTGCTGGTGGCAGATTTGAATATAAGTACTCTGGCCCCGTCCCATACACATACCAACCAAACTTCGACGTCAGGCGCCAGTTCTCACATCCCGAAGGATTACGAGAGACTATGCTTTATGGTACGATGCCAAGTACTGTCTTTGTGGAGCCCAATAGAAATGACTATTTGGAATTAAAGGCAAAACTTCAAATAGAGCCGGACTACCTCGAAGTTCTTGAGAAACAGACAACACAGAGCCAGTTTTAA

Function

symbol description
slitrk5a Predicted to act upstream of or within axonogenesis and regulation of presynapse assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in nervous system.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000103359

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017667 False 2652 mRNA 0.48 2 3089212 3094516
TCONS_00017668 True 2640 mRNA 0.48 2 3089212 3096150

Neighbor

gene id symbol gene type direction distance location
XLOC_008949 fndc3a coding downstream 10612 2987593 ~ 3078600 (-)
XLOC_008948 mlnr coding downstream 103613 2976120 ~ 2985599 (-)
XLOC_008947 zgc:153184 coding downstream 115844 2931882 ~ 2973368 (-)
XLOC_008946 CABZ01086029.1 coding downstream 158191 2918257 ~ 2931021 (-)
XLOC_008945 guca1c coding downstream 185737 2884711 ~ 2903475 (-)
XLOC_008951 NA coding upstream 19187 3115337 ~ 3116262 (-)
XLOC_008952 NA coding upstream 64288 3160438 ~ 3162459 (-)
XLOC_008953 stoml3a coding upstream 150173 3246323 ~ 3252727 (-)
XLOC_008954 slc25a15a coding upstream 158904 3255054 ~ 3282220 (-)
XLOC_008955 cog6 coding upstream 358379 3454529 ~ 3534705 (-)
XLOC_008942 NA non-coding downstream 273070 2813516 ~ 2816142 (-)
XLOC_008940 CABZ01086049.1 non-coding downstream 352714 2736383 ~ 2736498 (-)
XLOC_008933 NA non-coding downstream 463284 2618279 ~ 2625928 (-)
XLOC_008932 NA non-coding downstream 478042 2598804 ~ 2611170 (-)
XLOC_008957 NA non-coding upstream 658416 3754566 ~ 3760957 (-)
XLOC_008970 NA non-coding upstream 1067428 4163578 ~ 4174873 (-)
XLOC_008973 CU467614.1 non-coding upstream 1269008 4365158 ~ 4365272 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000299_01693958_01696561 SLITRK5 coding CI01000299 null 1692924 ~ 1697305 (-)