XLOC_008952


Basic Information

Item Value
gene id XLOC_008952
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 3160438 ~ 3162459 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019116
agccattttttccccatttttttcacaaaaaaaatgaaaaatttgtttgaatttaaacagttttcagttatttaaaaagtattttacaaaTAGTATGAATGATTTATATACATATAGTATTGAATAGAATTCAAATGTATTACATCTGTCACATTATTGTTGCAATGTATTGGCCCTCTCTGCCATTTTTCGATTATGCCAACACCTCTTCAGTGGGCTCATGGGATTtaagtaaatttatatataattttattaatttatttatttattttttcattcaaacTCATACCTAACAAATCTACTAAATCCACAGTAAATccagaaaaaaactgttttaagaggtctcttaatatttacatttatatttaaatatatgtacaaATTTATTTGTAGATTTTGAGGTGAAATACGGTTCTGCCATTATTTTCTCCACAGCTTTTGCACGATTCGCTTATTAGTGCTTGTAAAAATACGACTGGACGAAAGCAGTGACCTTTCTGACATGCTCAAAATAACACTGATACACAAAAAGACAgcaaacatgacaaaaaaaacacataatagtCAATAAAAAATGACATTACTCTGATCTGTAAATTAATCTAGTGCCAAAGTCACTATAGTACATTTCAAAACAATGCTAGAACACTCTAAATGTGACGTATTGCTACATCAAAGCTCCTGCTAAggtctgaagaaaaaaaaatgaatcatgaTCTCCAATGACACAGGATCATCTTTGTTTGGTTGTTGGCCAGATTTATAAAGGCCATTGTGACAATAGGAGACCAATTTAGGATGGATAACCTGTCGAATAAtctcttaaaggaacagttcccCCAAAACAAAATTAACTCATTATTTATTCTCTCTCAAGTGGTTCAAATTTTTAGAAATATCATCCATAGttgggaaaacaaatactataaaagtcaatgttaACTGAATGGTTCTGAAGAAGATGacggaattttcagttttgggtgtaCGGTCCCTTTAAATTTAAACTTCAGGCTGTAAATCTATTAGGAAAACAAATGAAGAAGTCTTTCTCGATCAACCATCTCATATACACAAAACGGTTCTTCCCTTTTGCTTTTTCATATTTCAATCccttcctttttttgtttgttcagtgATTTCAATcattacaaacaaataaaaagttgagtcaacttgaAATTCTATGGCTGCACAGCTTTGAGTTAACTGCAGATGACACAATTTAAGTGTAGTctactccaaaaaaaaaactgtgcagcCTTACAATTTGAAGTTAAcgcaacttaaaattttaaggctgcgcagctttttttttttttttttttttttttttttgagttgactcaattTTTAAGCCAAGTAAACCATATGACATAATTTAAGAGGAGTCagctaaaaaaaaactgcagcctTATAATTTTAGGTCcagtcaacttaaaattgtaaggctgTGCAGATTTTTTGAGTTAACTCGACTTTTAATCCTTTTACTGCAGATGATACGATTTAAGTGGAGTCAACTCAAAAAACTGTGcggccttacaattttaagttaactcgacttaaaattgtaaaaccgCACagtttttgagttgactcaaattTTAACCCAAGTACAGCAGATGACATGacttaagttgagtcaactcaaaaaaactGTGCAGCCTTACAATATTAAGTCAAGTCAACTTAAAGTTGTAAGgctgcacagtttgtttgttttttgagttGACTCCACTTTTAACCCAAGTACAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019116 True 1758 lncRNA 0.31 2 3160438 3162459

Neighbor

gene id symbol gene type direction distance location
XLOC_008951 NA coding downstream 44176 3115337 ~ 3116262 (-)
XLOC_008950 slitrk5a coding downstream 64288 3089212 ~ 3096150 (-)
XLOC_008949 fndc3a coding downstream 81838 2987593 ~ 3078600 (-)
XLOC_008948 mlnr coding downstream 174839 2976120 ~ 2985599 (-)
XLOC_008947 zgc:153184 coding downstream 187070 2931882 ~ 2973368 (-)
XLOC_008953 stoml3a coding upstream 83864 3246323 ~ 3252727 (-)
XLOC_008954 slc25a15a coding upstream 92595 3255054 ~ 3282220 (-)
XLOC_008955 cog6 coding upstream 292070 3454529 ~ 3534705 (-)
XLOC_008956 lpar6a coding upstream 493753 3656212 ~ 3736773 (-)
XLOC_008957 NA coding upstream 592107 3754566 ~ 3760957 (-)
XLOC_008946 CABZ01086029.1 non-coding downstream 229417 2918257 ~ 2931021 (-)
XLOC_008942 NA non-coding downstream 344296 2813516 ~ 2816142 (-)
XLOC_008940 CABZ01086049.1 non-coding downstream 423940 2736383 ~ 2736498 (-)
XLOC_008933 NA non-coding downstream 534510 2618279 ~ 2625928 (-)
XLOC_008970 NA non-coding upstream 1001119 4163578 ~ 4174873 (-)
XLOC_008973 CU467614.1 non-coding upstream 1202699 4365158 ~ 4365272 (-)
XLOC_008997 FO704791.1 non-coding upstream 2220603 5383062 ~ 5383180 (-)
XLOC_009008 NA non-coding upstream 2735951 5898410 ~ 5901982 (-)

Expression


Co-expression Network