XLOC_008954 (slc25a15a)


Basic Information

Item Value
gene id XLOC_008954
gene name slc25a15a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 3255054 ~ 3282220 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017670
GAAGTGTGTGAAGGTAGTTTAAACCAGCTCTGCATTTGCGTCAGCCGTAAGAACATATTTCGAGAGTACACTTTGTTCCGGGGCTTTTAACATTACTGGATACAGTGTGAAGAACAGAAGAAGTGTCCGGGAGCAGGACAGGGCGGgaagtgacatcatatAGCAGAAGCGCAGCATGGCTCCACATCCTGTCACCCAGGCCGTCATTGACCTGTCAGCTGGAGCATGTGGTGGGACTGCATGTGTGATCAGCGGACAGCCGTTCGACACGGCCAAGGTGAAGATGCAGACGTTCCCCGGCCTGTACAGAGGCTTCGTCCACTGCTTCGTCTCGGTGTACAAACAGGTTGGCCTGCGTGGGCTTTATCAGGGCACCACACCCGCCCTCATAGCCAACATCGCGGAGAACGCAGTGCTCTTCATGAGCTACGGCTTCTGCCAGAATGTGGTGCGCTTTCTTTCAGGACTGGACCGAAACACTGAACTCAGTGATGTCCAGAAGGCCTGCTCCGGCTCTGTGGCCTCTGTCTTCTCCTCTCTGGCTTTGTGTCCCACTGAACTGGTCAAATGTCGACTGCAGGCCATGCATGAAATGGAGGCATCCGGCAAGATCGCCAGCGGACAAAAAAGCACGGTGTGGTCTGTTGTGAGAAATGTGTTGCGGACAAACGGTCCTTTGGGTTTCTATCAGGGCTTCACCACCACTATTGTCCGAGAGCTGCCTGGATATTTCTGTTTCTTTGGAGGTTATGAACTCAGCCGCTCCATATTTGCCCACCACATGGCCACAGACAAAGAGCACATCGGTGTCGTGCCGCTGATGTTCAGTGGGGGTTTTGGCGGTGCGTGTCTCTGGTTGGTTGTGTATCCTATAGACTGTGTGAAATCTCGCATTCAGGTTCTGTCTCTAGCAGGGAAACAGGAAGGTTTCATCAAGACTCTTATGGGGATTTTACGAAACGAAGGAGTGGCGCCTCTGTATTCAGGTTTGACTCCTACTATGATCCGCACGTTTCCTGCTAATGGAGCTCTCTTTCTGGCTTATGAAGTCAGTCGCAAGTTCATGATGAAGCAGTTTGATCATTGAGTCCATATCAGTTTTTATAGCCTTTCTGACTTGTTATTTTTTAAGTTTCCATACTGTGTTTTTGTTTACATGTgtcttttactgaatcttttaaaTGATATGCACAATGAGTGCAGCTTGAATATTTTATATGTGAGAAATAATAATCAAGGCAGGACACTACAGGAGAATAGAgtcaaataataatactatttttcCGTGCTTatacagtttttgtcttgtttctacttCAAATATCTTAAATTAAGAATCGTTTTCTATACAAGAAAGAAAATCATCTTGAATTCAGCAGAATAGTAGTCAACTTGTATACTGCATTTACTGTATGGTGTGTTGTATAGATAGTTGTATAGTGTGTTGTTGAATACTGTGTAAGTCTAGTTGTCTTTTATTAAGGTTTTGTTATAAAGTACATGTCTGAACAACTGTGAAAGCtgaacagcagtgtgtgtgacaAATTTACCATAATGGACACAATGTTTTTGACGCTATATAAATTACACTCCTTGTATTGC
>TCONS_00017671
GCAGCATGGCTCCACATCCTGTCACCCAGGCCGTCATTGACCTGTCAGCTGGAGCATGTGGTGGGACTGCATGTGTGATCAGCGGACAGCCGTTCGACACGGCCAAGGTGAAGATGCAGACGTTCCCCGGCCTGTACAGAGGCTTCGTCCACTGCTTCGTCTCGGTGTACAAACAGGTTGGCCTGCGTGGGCTTTATCAGGGCACCACACCCGCCCTCATAGCCAACATCGCGGAGAACGCAGTGCTCTTCATGAGCTACGGCTTCTGCCAGAATGTGGTGCGCTTTCTTTCAGGACTGGACCGAAACACTGAACTCAGTGATGTCCAGAAGGCCTGCTCCGGCTCTGTGGCCTCTGTCTTCTCCTCTCTGGCTTTGTGTCCCACTGAACTGGTCAAATGTCGACTGCAGGCCATGCATGAAATGGAGGCATCCGGCAAGATCGCCAGCGGACAAAAAAGCACGGTGTGGTCTGTTGTGAGAAATGTGTTGCGGACAAACGGTCCTTTGGGTTTCTATCAGGGCTTCACCACCACTATTGTCCGAGAGCTGCCTGGATATTTCTGTTTCTTTGGAGGTTATGAACTCAGCCGCTCCATATTTGCCCACCACATGGCCACAGACAAAGAGCACATCGGTGTCGTGCCGCTGATGTTCAGTGGGGGTTTTGGCGGTGCGTGTCTCTGGTTGGTTGTGTATCCTATAGACTGTGTGAAATCTCGCATTCAGGTTCTGTCTCTAGCAGGGAAACAGGAAGGTTTCATCAAGACTCTTATGGGGATTTTACGAAACGAAGGAGTGGCGCCTCTGTATTCAGGTTTGACTCCTACTATGATCCGCACGTTTCCTGCTAATGGAGCTCTCTTTCTGGCTTATGAAGTCAGTCGCAAGTTCATGATGAAGCAGTTTGATCATTGAGTCCA

Function

symbol description
slc25a15a Predicted to enable L-ornithine transmembrane transporter activity. Predicted to be involved in mitochondrial L-ornithine transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in amino acid metabolic disorder; citrullinemia; and ornithine translocase deficiency. Orthologous to human SLC25A15 (solute carrier family 25 member 15).

GO:

id name namespace
GO:1990575 mitochondrial L-ornithine transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0000064 L-ornithine transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-1072 Predicted to enable L-ornithine transmembrane transporter activity. Predicted to be involved in mitochondrial L-ornithine transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in amino acid metabolic disorder; citrullinemia; and ornithine translocase deficiency. Orthologous to human SLC25A15 (solute carrier family 25 member 15).

Ensembl:

ensembl_id ENSDARG00000063539

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017670 False 1602 mRNA 0.45 7 3255054 3282220
TCONS_00017671 True 922 mRNA 0.53 6 3255564 3277635

Neighbor

gene id symbol gene type direction distance location
XLOC_008953 stoml3a coding downstream 2327 3246323 ~ 3252727 (-)
XLOC_008952 NA coding downstream 92595 3160438 ~ 3162459 (-)
XLOC_008951 NA coding downstream 138792 3115337 ~ 3116262 (-)
XLOC_008950 slitrk5a coding downstream 158904 3089212 ~ 3096150 (-)
XLOC_008949 fndc3a coding downstream 176454 2987593 ~ 3078600 (-)
XLOC_008955 cog6 coding upstream 172309 3454529 ~ 3534705 (-)
XLOC_008956 lpar6a coding upstream 373992 3656212 ~ 3736773 (-)
XLOC_008957 NA coding upstream 472346 3754566 ~ 3760957 (-)
XLOC_008958 mindy4b coding upstream 643875 3926095 ~ 3940671 (-)
XLOC_008959 clrn1 coding upstream 665476 3947696 ~ 3956906 (-)
XLOC_008946 CABZ01086029.1 non-coding downstream 324033 2918257 ~ 2931021 (-)
XLOC_008942 NA non-coding downstream 438912 2813516 ~ 2816142 (-)
XLOC_008940 CABZ01086049.1 non-coding downstream 518556 2736383 ~ 2736498 (-)
XLOC_008970 NA non-coding upstream 881358 4163578 ~ 4174873 (-)
XLOC_008973 CU467614.1 non-coding upstream 1082938 4365158 ~ 4365272 (-)
XLOC_008997 FO704791.1 non-coding upstream 2100842 5383062 ~ 5383180 (-)
XLOC_009008 NA non-coding upstream 2616190 5898410 ~ 5901982 (-)

Expression


Co-expression Network