XLOC_008956 (lpar6a)


Basic Information

Item Value
gene id XLOC_008956
gene name lpar6a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 3656212 ~ 3736773 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017674
AAAAGAGTCCTCCACAGCCACAGCTGCCTCGGTCTCCCGCCTCTTCAATGCGCACAGCAATGAATGCCCCTGGGGCGACTGCTGACGGAGACACCGAGACAGAGCCGCGAGGAAGGGGGTGGGCCAGGAAACAGACCCTCGGCTGAAGCCAGGactcactcatttactcacactgAGTCTACACACAGGTGCCCCAATCTGTGGGAACAAAGAGAGCGGATACTATCTGGGAATGCTTCAAGTGCGACTTCTGCGGAGAGGATTGTAACTGCCACCCCATAGCGTGCCTTTGTCTGTTGTTAAGATGTACAATACAAGTCTTGAGATGGAAATGCTCAATGTGAGCAACGTCACTCACTGCCCGAAGAATGACAACTTTAAATATCCCCTCTACAGCATGGTGTTTAGCATCGTCTTCATGGTAGGACTGATCACGAATGTTGCCGCCATGTACATCTTCATGTGTTCGTTAAAACTGCGGAATGAAACCACTACGTATATGATGAACCTAGTAGTGTCGGACTTGTTATTCGTGCTCACTCTACCCTTGAGGGTTTTTTACTTCGTCCAGCAGAACTGGCCGTTCGGCAGTCTCCTCTGCAAGCTTTCCGTTTCGCTCTTCTACACCAACATGTACGGGAGCATCCTATTCCTGACCTGCATAAGCGTGGACCGCTTTCTGGCCATCGTTTACCCCTTCCGATCTAGAGGACTCCGAACCAAACGCAATGCCAAAATTGTGTGCGCTGCAGTTTGGGTTCTCGTTCTTTCAGGAAGCCTTCCTACGGGATTCATGCTCAACAGTACTAATAAGCTGGAGAACAACAGCATCTCCTGCTTCGAGAACTTCTCCTCGAAGGAATGGAAGAGCCATCTTTCAAAAGTGGTGATTTTTATAGAGACGGTGGGGTTTCTGATCCCACTGATGCTCAATGTGGTTTGCTCTGCGATGGTGCTTCAGACTTTAAGGAGACCAAACACTGTGAGTCGAGGAGGGAAGCTCAACAAGAAGAAGATCTTGAGGATGATCATCGTCCACCTCTTCATCTTCTGCTTCTGCTTCATCCCGTACAACGTCAACCTTGTCTTCTACTCCCTCGTGCGAACAAACACCTTGAAAGGATGCGCGGCGGAGTCGGTAGTCCGGACCATCTATCCCATCGCTCTGTGCATCGCCGTGTCCAACTGCTGCTTCGATCCCATCGTCTACTATTTCACCTCGGAGACTATACAGAACTCCATTAAGAGGAAGACCCAGACCGGCCATTCCATAGATGTTAAATTTTCCGAGGCCTTGCAGTCGGAGACGTCGTCCACCCTACAGTTCAGCCTGAGGTCCATCAAGAACAAGATGTTTCACAATGAGTCCCACGTATGAGGGATTACCAGTGGATTTAAGGACACATAAAGCACTCTTTAGCATGTGGATATATATCGGGTTTGTTTAATATCTCTGAGGGCGATAAGTAAACGGTGGGCTCTTATAGGGATTTACCTCCCTGTAAAAGTCATCCTTCAGTCCAGAACCCTGGGACACACCTGTTCCCCTTGGAAATATGTCCAAACATTTGAAAAGCGCAGTAAGGATAATGCAAATATAGATCAGCTGGAAGTCTCTAACTGTTTGTGAATGTACTCACATTTCCAGAATTTGGTAAGTTAATGTggaaacctgagcaccaagaggaaaccaacgccaacatggggagaacatgcaaactccacacagaaacgccaactgacccagtcggggctcgaaccagtgatctttttgctgtgaggcgattgtgctacacacTATGCCACACTCACATAATAACATCTCtagaattttaaaaatgatatacTTTCACAAAAAAGTCTGCAGAAAAAGAACACTGAGACAGAACTATGACAAATTATTTCATTCAAAGTTAAAAAGACAAAAG
>TCONS_00017675
TTGTTAAGATGTACAATACAAGTCTTGAGATGGAAATGCTCAATGTGAGCAACGTCACTCACTGCCCGAAGAATGACAACTTTAAATATCCCCTCTACAGCATGGTGTTTAGCATCGTCTTCATGGTAGGACTGATCACGAATGTTGCCGCCATGTACATCTTCATGTGTTCGTTAAAACTGCGGAATGAAACCACTACGTATATGATGAACCTAGTAGTGTCGGACTTGTTATTCGTGCTCACTCTACCCTTGAGGGTTTTTTACTTCGTCCAGCAGAACTGGCCGTTCGGCAGTCTCCTCTGCAAGCTTTCCGTTTCGCTCTTCTACACCAACATGTACGGGAGCATCCTATTCCTGACCTGCATAAGCGTGGACCGCTTTCTGGCCATCGTTTACCCCTTCCGATCTAGAGGACTCCGAACCAAACGCAATGCCAAAATTGTGTGCGCTGCAGTTTGGGTTCTCGTTCTTTCAGGAAGCCTTCCTACGGGATTCATGCTCAACAGTACTAATAAGCTGGAGAACAACAGCATCTCCTGCTTCGAGAACTTCTCCTCGAAGGAATGGAAGAGCCATCTTTCAAAAGTGGTGATTTTTATAGAGACGGTGGGGTTTCTGATCCCACTGATGCTCAATGTGGTTTGCTCTGCGATGGTGCTTCAGACTTTAAGGAGACCAAACACTGTGAGTCGAGGAGGGAAGCTCAACAAGAAGAAGATCTTGAGGATGATCATCGTCCACCTCTTCATCTTCTGCTTCTGCTTCATCCCGTACAACGTCAACCTTGTCTTCTACTCCCTCGTGCGAACAAACACCTTGAAAGGATGCGCGGCGGAGTCGGTAGTCCGGACCATCTATCCCATCGCTCTGTGCATCGCCGTGTCCAACTGCTGCTTCGATCCCATCGTCTACTATTTCACCTCGGAGACTATACAGAACTCCATTAAGAGGAAGACCCAGACCGGCCATTCCATAGATGTTAAATTTTCCGAGGCCTTGCAGTCGGAGACGTCGTCCACCCTACAGTTCAGCCTGAGGTCCATCAAGAACAAGATGTTTCACAATGAGTCCCACGTATGA

Function

symbol description
lpar6a Enables lysophosphatidic acid receptor activity. Involved in adenylate cyclase-modulating G protein-coupled receptor signaling pathway. Acts upstream of or within angiogenesis. Is integral component of plasma membrane. Human ortholog(s) of this gene implicated in hypotrichosis. Orthologous to human LPAR6 (lysophosphatidic acid receptor 6).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0035025 positive regulation of Rho protein signal transduction biological_process
GO:0051482 positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G protein-coupled signaling pathway biological_process
GO:0001525 angiogenesis biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0070915 lysophosphatidic acid receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-343 Enables lysophosphatidic acid receptor activity. Involved in adenylate cyclase-modulating G protein-coupled receptor signaling pathway. Acts upstream of or within angiogenesis. Is integral component of plasma membrane. Human ortholog(s) of this gene implicated in hypotrichosis. Orthologous to human LPAR6 (lysophosphatidic acid receptor 6).

Ensembl:

ensembl_id ENSDARG00000062552

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017674 False 1928 mRNA 0.47 3 3656212 3736773
TCONS_00017675 True 1082 mRNA 0.48 1 3735068 3736149

Neighbor

gene id symbol gene type direction distance location
XLOC_008955 cog6 coding downstream 121507 3454529 ~ 3534705 (-)
XLOC_008954 slc25a15a coding downstream 373992 3255054 ~ 3282220 (-)
XLOC_008953 stoml3a coding downstream 403485 3246323 ~ 3252727 (-)
XLOC_008952 NA coding downstream 493753 3160438 ~ 3162459 (-)
XLOC_008951 NA coding downstream 539950 3115337 ~ 3116262 (-)
XLOC_008957 NA coding upstream 17793 3754566 ~ 3760957 (-)
XLOC_008958 mindy4b coding upstream 189322 3926095 ~ 3940671 (-)
XLOC_008959 clrn1 coding upstream 210923 3947696 ~ 3956906 (-)
XLOC_008960 gpr171 coding upstream 221103 3957876 ~ 3963649 (-)
XLOC_008961 si:ch73-309g22.1 coding upstream 234024 3970797 ~ 3976035 (-)
XLOC_008946 CABZ01086029.1 non-coding downstream 725191 2918257 ~ 2931021 (-)
XLOC_008942 NA non-coding downstream 840070 2813516 ~ 2816142 (-)
XLOC_008940 CABZ01086049.1 non-coding downstream 919714 2736383 ~ 2736498 (-)
XLOC_008970 NA non-coding upstream 426805 4163578 ~ 4174873 (-)
XLOC_008973 CU467614.1 non-coding upstream 628385 4365158 ~ 4365272 (-)
XLOC_008997 FO704791.1 non-coding upstream 1646289 5383062 ~ 5383180 (-)
XLOC_009008 NA non-coding upstream 2161637 5898410 ~ 5901982 (-)

Expression


Co-expression Network