XLOC_008958 (mindy4b)


Basic Information

Item Value
gene id XLOC_008958
gene name mindy4b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 3926095 ~ 3940671 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017676
aaacgtaagtgaccggttatgaaaatgaagtgaggtgtcgcggacctcttttccagcgcactatgcgcggatataactgaggacgcgcgggtgctgagggagggaggtgtcacgaacactgcgctctctattctgccgccctatgcacggatataactgaggacgcgcgggtgtcgcggacctcaattctgccgccctatgcacggatataactgaggacacgtgGGTGCTGATGAAAGTGTccctgacgccgccctctctattcttgcgtctatgcgcgaatatatctgaggacgcggatggtgagggaggtgtcgcggacacaactgaggacgcgggtggtaagggaggtgtcggggatgccgccctctctatactgccgccctaggcggccgcctaggtcgcctctatagacgcgccggccctgtatatatatatatatatcaaacaatCCTAAAAGTAAAAGGcacttttgtcattatttatttatttttttttattagtttttttgtttatttatttttgtcactcATACAGAGTTTAAGAACTGTTTTGTTTGGGAACACCTTCCACATATTCAACTATGAGTGGAAGAAATCATTTTTCAAGTTCCGGGAGCCTTTCTCTGAGATGGCGTATGCTCTGGAAACTGAGAGGGGAGGAGCGTGTGCTGTTCAGATGGTGGTTCAGGCTCATATTATTAAATACTTGCTCTTCAATCGGTCAGCAGAATCAGACTGTACAATTCAGAGTATGATGACTGTAGGAGAGATGGAGCAGAGGAAGGCACTGGCCGCTGCTCTGACTGATATCTTGTGGGCCGCTGGTGAGGAGGAGACAGTCACCGTGTGTTTGGTGACGTCAGAGCGCTGCTTCACGCCACACCTCAACTACAAACTGGACAGCTTCACTGAGAGATTGCAGCTTTTCACCTTTAAGAAGAAAGAAGAAGCTAGAGCATTCATATATGAGCATATCCAATGTTTCAGGGAAGAAGGAAGCCATGGAATCATACTCTTTCTTTATAGTCTTATCTTCTCCAGGACAATCGACAGGATACAGACAGACTTGGATTGTACCACTACACAACTTTTGCATCTTCGCTTTGGGAATTTTGTTTGTCGACAGGCTTTAATTAACCTGCTGTTGACGGGCCGTGCGACTCCTCATGTCTTCAATGGTACATCCCATTGCAAAGAGCAAGACAAACCTCTCTATGGTGTTCTGACCCGCAGCAATGTCGGATATCTGCTCTGGAACAGGGATCAAGTCAACCACGCACAGCTCCCACTGGTGGGCAGCATGCTGAAAACCCCCAAGCTGCCTATCTGGGTGTGCAACATCAATGGCACCTACAGTGTTTTGTTCGGCACAAACTGTTCACTGCTGTCTGACTGGAAGATGGAGCATCTTTTCCTGCTGTATTTCTACAATGGCCAACCGACTCAGCTCAACACAACAACACTCTCTATAGATACACATTCCCATCACTGGGAGGCTGACAGTAATGACAGTCAGGGAGACCCAGAGAAAAAGTTCCCATCTCTGGAGATGACCATCCGGACCAAGTGGGAAGGTGCTGTCATTGACTGGAATGGGACGGTGCCTTTTTTCTGAAGGATTCAGGAGTGCCTGATATATAGACAAGTAGACTACCTCTTCCGCAATTGAGTTGATTATACTGGTTTTAATTATTGccttgtaaatattattattgcctCTAACAACACACCAGTTTGACCATAATAACCAACAATATGTAGGGTGACCATACTTCAGTTTGCAAACAAATGTGTAAAAACCATGATGAAGTATATCTTGGAGGCTGTTTTCGCAGAATGAATCCAGATAGGTTTAtcgactgaagggctttattctgtgtaAACAACTATCCTGGATGTACTTTTACCttcttattacatggctacttgcaaCAAATCATAAAAactagacacaaaacattgttcagaGCCGTAATGCTTTATAATTCTGTaattaaacacaaagctgacagaaacgaaaacagctgagtggagtatacactaacctgcgcattattcagttcAGTTAAATTCGATTTATGTTTAAttctttagcgcttttacaatgttgattgtgtcaaagccgcttaacatagaagttgtagCTAATTGAAGCtgtgttagtccagttttcagagttgaagttcagtttagtgtggttaaaatgtcactgctgaaagtctgaACACTAataagcaaatccatcgatgtgcatctccacaagtcccaaaccaagcaagtaaGTGGCGAGGAACCAGACTTCATTAAtcgacgaaagtgaaggaaaaagacCTTGAGTGAATCCAGGCTcaattgggcacgaccatttctccactggacAGACTTcttatgcagagctgcagtctaggcgctggaggctggagaacgctggacgctGAAACAGCCAGGTGTTCAGGCAGGCCTATgggatcaatgcgaagactcgtctgtcactgtggtctttcaggaattagtctcatgctctccgctcctccatgactaccacagcatcagctcaggatacggcctggtccaagattatggataccttggtaTCATTTCTTTACAGGTCTTGGAACCCATCAAAGGCGCTGCATAATATCTACAGTCTTGGGATGAGTATCCTCGGGTGGAAATAGAGAATTAAAGTATAGGGAGTATAGAAATTCAGGCTTTAGATATTTTTGAAATCCTGGCAGAAAGTCCCaatgttcagaaaaaaaagagtATGTATGGACACCCTAAACATAAGATCATTTTCCAAAAAAAGGAAGTTATGTTACATATTTAAATCTGATTTGCACATGTCACTCATGGTTACCTCTTTCCTGGTGTCTCTATGATTTTTCTTCCACAGTGTGGCTGTGCTTCAGTTTGGATCTGATATATGGGTTCAAGTAGATAGTATCAAATCTCAAGGCTAATCGCTGTTCTGAAGTCGTTTTATGTTCCAGGCTTTAATTATTAAGTTAACAGTGTTGAGAAGTATCTAACTACTGGCATAACTAGATTTTTTTCTGTAGTTTGAAAGTAGCTTCTTATTAATCGCTGGAGCTTTTTTCAGTGGTAAACTATTGGAACGGTAATTATTGTGAACAGCGCTATACAAGTAAACTTGAATCGAATTTTTCCAACAAACAGCTaccctacctgacaaaagtcttgtcgtcgattccagttgtaagagcaacaaatattaacttgacttctagttcatTATTTGGAAAATTGGCAGAAGGTAAATCCCAGCTGCACCCCAATCATCACACAAactgcagaagatctactggAACCCGCAAGAACCCAAGATTCtgtagaaatcagtcaagttttgtaaaggaaaaatcatggttcggggttacattcagtatgggggaatgcaagagatctgcagagtggatggcaacatcaacagcctgagggtatcaaaacatttgtgctgcccattacattacaaaccacagcagagggtaAATTCtctagcaggatagcgctccttcatacttcagcctccacatcaaagctcctgaaagcagagaaggtcaaggtgctccaggacctTGATGAACATGAccaaatgaacattattgagcatgtctggggtaaattgaagaaggaggcactgaagatgaatccaaataatcttaatgaactctgggagccctgcaggaacactttctttgccattcctgtTGACTTTAATAAGAGATTTGAGTCgtgagatgtatggatgcagtcctccaagctcatgatggagtcacacacaacacacaataTTTACCCTTTTTCCACCGCagaatgactttatattctatactggacattacttCTGTTTGGTGACAAGacctttgtctaagcaaagtcagacctgactgtcctaattaaataattaaaaatcaagacatgatcatatttaatttggtgaaataaaaataatttagaggcctttgcctttaatttaagccacttctgagacCATGTTATCAACAAGCAGTGAAATTATCATTTGTTGTTCATAAAACCTGGATAGGCGacacgacttttgtcaggtagtgtacattctGTTATGTTAACCTGCAATAGTCTGAAGCAGCACAGCGTACAAGATCACATACTACAATATTGTATTACAGCCATCTATTGGTGTATCACACATCTCACAGTTtcacattaatttattattattattttgtaaataatattgtagGTAATAAGCATAATATATTGTGAGGACAATATAATTTCCTACCAAAATGGAATGGAGCCATCTGTCACAGTTTGTTATTGTTACAGTACTTTAATTTTTGATTTTGCGGTGCAGTtttgtactttatttaaaaactgtgtgTAATAAAACATTTGCCTTTGACAGCATAATTATATTGCAtgttttaagcacttttttgGGGGCGtaacggtggcttagtggttagcactgtcgccacacagcaagaaggttgctggttcgacccctggctgggccagttggcatttgtgaggagtttgcatgttctccccatgttggcgtgggttttttccaggtgctcaggtttcccccacaagccaaagacatgcgctacaggtgaattgaatacactaaattggctgtagtgtcattcattcattcattttcttgtcggcttagtccagaggtggccaaccctgttcctcgagagccaccttcctgcagatttcagttgctacccatatcaaacacacctgaaccaattaattaggacctgaacataacgtgataattacaggcaggtgtgtttgatatgagttgcaactgaaatctgcaggaaggtggctcttcaggaacagggttggccacccctggctcagtccctttattaatccgaggtcaccacagcggaatgaaccgccaactcatccagcatgtttttacacagcggatgcccttccagccacaacccaactctgggaaacacacgcacatacattccctcatacactacggacaatttagctacccaatttacctgtaccacatgtctttggactgtggaggaaaccggagcacctggaggaaacccacacaaacgcagggagaacatgcaaactccacacagaaacgccaactgagccgaggctcgaaccagcgaaccagcgaccttcttgctgtgaggcaacagcactacctacggcACCACTGTGTAGCCTGGCTG

Function

symbol description
mindy4b Predicted to enable Lys48-specific deubiquitinase activity. Predicted to act upstream of or within protein K48-linked deubiquitination. Is expressed in neuromast. Orthologous to human MINDY4B (MINDY family member 4B).

GO:

id name namespace
GO:1990380 Lys48-specific deubiquitinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-140127-1 Predicted to enable Lys48-specific deubiquitinase activity. Predicted to act upstream of or within protein K48-linked deubiquitination. Is expressed in neuromast. Orthologous to human MINDY4B (MINDY family member 4B).

Ensembl:

ensembl_id ENSDARG00000112337

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017676 True 5230 mRNA 0.43 9 3926095 3940671

Neighbor

gene id symbol gene type direction distance location
XLOC_008957 NA coding downstream 165138 3754566 ~ 3760957 (-)
XLOC_008956 lpar6a coding downstream 189322 3656212 ~ 3736773 (-)
XLOC_008955 cog6 coding downstream 391390 3454529 ~ 3534705 (-)
XLOC_008954 slc25a15a coding downstream 643875 3255054 ~ 3282220 (-)
XLOC_008953 stoml3a coding downstream 673368 3246323 ~ 3252727 (-)
XLOC_008959 clrn1 coding upstream 7025 3947696 ~ 3956906 (-)
XLOC_008960 gpr171 coding upstream 17205 3957876 ~ 3963649 (-)
XLOC_008961 si:ch73-309g22.1 coding upstream 30126 3970797 ~ 3976035 (-)
XLOC_008962 CR626884.4 coding upstream 68901 4009572 ~ 4011013 (-)
XLOC_008963 CR626884.6 coding upstream 77691 4018362 ~ 4027367 (-)
XLOC_008952 NA non-coding downstream 763636 3160438 ~ 3162459 (-)
XLOC_008951 NA non-coding downstream 809833 3115337 ~ 3116262 (-)
XLOC_008946 CABZ01086029.1 non-coding downstream 995074 2918257 ~ 2931021 (-)
XLOC_008942 NA non-coding downstream 1109953 2813516 ~ 2816142 (-)
XLOC_008970 NA non-coding upstream 222907 4163578 ~ 4174873 (-)
XLOC_008973 CU467614.1 non-coding upstream 424487 4365158 ~ 4365272 (-)
XLOC_008997 FO704791.1 non-coding upstream 1442391 5383062 ~ 5383180 (-)
XLOC_009008 NA non-coding upstream 1957739 5898410 ~ 5901982 (-)
XLOC_009014 NA non-coding upstream 3027710 6968381 ~ 6976921 (-)

Expression


Co-expression Network