XLOC_008960 (gpr171)


Basic Information

Item Value
gene id XLOC_008960
gene name gpr171
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 3957876 ~ 3963649 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017678
ATGAACAGCATTTGTGTGATCAACGACAACATGGTGCCGTTCGCCACAATCTACATCATCATCTTCCTGATTGGGATGGTGACTAGCTTGGTGGCTCTGTGGGCTTTCATAACTAGCCGTAGTGCTAAAAAGTGCATCAACGTTTACCTCATCAATCTTCTAACATCAGACTTTCTCCTCATGTTAGCATTACCCGTCAAGATTGCCAAAGATCTTGGCAATGCCTCCAAAGGTTTGACCATCTTTCACTGCCAAGTGAGTGGGCCGCTTATTTACATAAACATGTACGCATCCATCATCTTTTTAGCATTTGTTAGCATTCAGCGCTACCTCCAGATCACCCGCAGCTCCAAACTACTGCGGCTACAGGACGTGGGATTTGCGGTGCTGATGTCCTCTGTGGTTTGGTTCCTCGTACTCTTCATCAACGTACCCAACATGGCCATCCCCATCAAAAAAGACATTGAAGATAAAGTTGGCTTGACGTGCGCTGACTTAAAAGAGGATTTGGGCAAGCACTGGCATGCGTTGTCTGTGTTTCTGGGCATGGCGATCTTCTTCAACGCGTCGGTAGCCGTGCTTTTGTCCAACGGTCTGGTTTTGAGGAAGTTTTGGAGTCAGCATGAATCTGAGCCTGAGGAAAAGGCTATCGCCCGACATGCTGTTGTAAACATTGCATTGGTGACATTGGCTTACGTAGTGAGCTTCGTGCCGTATCATGTTGTCCGCATGCCGTACACCTTCACGCAGATAGAGGTCATCACTAAATGCACCTTAAAGAAGAGTCTCTTCTTGGCTAAAGAGTCCACTCTGCTTCTGGCCATCCTGCATCTGTGCTTTGACCCTGTGCTGTACTTTGTTTTTTGCCGCGCATTCAGGTATCAGATCACGAAGGCCTTCACTAAGAGAGACAagaagcaaaaagaaaaaaaaatagttgaaattttgtag
>TCONS_00017679
ATGAACAGCATTTGTGTGATCAACGACAACATGGTGCCGTTCGCCACAATCTACATCATCATCTTCCTGATTGGGATGGTGACTAGCTTGGTGGCTCTGTGGGCTTTCATAACTAGCCGTAGTGCTAAAAAGTGCATCAACGTTTACCTCATCAATCTTCTAACATCAGACTTTCTCCTCATGTTAGCATTACCCGTCAAGATTGCCAAAGATCTTGGCAATGCCTCCAAAGGTTTGACCATCTTTCACTGCCAAGTGAGTGGGCCGCTTATTTACATAAACATGTACGCATCCATCATCTTTTTAGCATTTGTTAGCATTCAGCGCTACCTCCAGATCACCCGCAGCTCCAAACTACTGCGGCTACAGGACGTGGGATTTGCGGTGCTGATGTCCTCTGTGGTTTGGTTCCTCGTACTCTTCATCAACGTACCCAACATGGCCATCCCCATCAAAAAAGACATTGAAGATAAAGTTGGCTTGACGTGCGCTGACTTAAAAGAGGATTTGGGCAAGCACTGGCATGCGTTGTCTGTGTTTCTGGGCATGGCGATCTTCTTCAACGCGTCGGTAGCCGTGCTTTTGTCCAACGGTCTGGTTTTGAGGAAGTTTTGGAGTCAGCATGAATCTGAGCCTGAGGAAAAGGCTATCGCCCGACATGCTGTTGTAAACATTGCATTGGTGACATTGGCTTACGTAGTGAGCTTCGTGCCGTATCATGTTGTCCGCATGCCGTACACCTTCACGCAGATAGAGGTCATCACTAAATGCACCTTAAAGAAGAGTCTCTTCTTGGCTAAAGAGTCCACTCTGCTTCTGGCCATCCTGCATCTGTGCTTTGACCCTGTGCTGTACTTTGTTTTTTGCCGCGCATTCAGGTATCAGATCACGAAGGCCTTCACTAAGAGAGACAGCCAAAAGCCCAGGGTGATCGCAGcttaa

Function

symbol description
gpr171 Predicted to enable G protein-coupled purinergic nucleotide receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human GPR171 (G protein-coupled receptor 171).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0045028 G protein-coupled purinergic nucleotide receptor activity molecular_function

KEGG:

id description
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-131121-339 Predicted to enable G protein-coupled purinergic nucleotide receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human GPR171 (G protein-coupled receptor 171).

Ensembl:

ensembl_id ENSDARG00000105008

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017678 False 951 mRNA 0.46 3 3957876 3963649
TCONS_00017679 True 942 mRNA 0.48 3 3961409 3963649

Neighbor

gene id symbol gene type direction distance location
XLOC_008959 clrn1 coding downstream 970 3947696 ~ 3956906 (-)
XLOC_008958 mindy4b coding downstream 17205 3926095 ~ 3940671 (-)
XLOC_008957 NA coding downstream 196919 3754566 ~ 3760957 (-)
XLOC_008956 lpar6a coding downstream 221103 3656212 ~ 3736773 (-)
XLOC_008955 cog6 coding downstream 423171 3454529 ~ 3534705 (-)
XLOC_008961 si:ch73-309g22.1 coding upstream 7148 3970797 ~ 3976035 (-)
XLOC_008962 CR626884.4 coding upstream 45923 4009572 ~ 4011013 (-)
XLOC_008963 CR626884.6 coding upstream 54713 4018362 ~ 4027367 (-)
XLOC_008964 P2RY14 coding upstream 73060 4036709 ~ 4037626 (-)
XLOC_008965 CR626884.5 coding upstream 85573 4049222 ~ 4053149 (-)
XLOC_008952 NA non-coding downstream 795417 3160438 ~ 3162459 (-)
XLOC_008951 NA non-coding downstream 841614 3115337 ~ 3116262 (-)
XLOC_008946 CABZ01086029.1 non-coding downstream 1026855 2918257 ~ 2931021 (-)
XLOC_008942 NA non-coding downstream 1141734 2813516 ~ 2816142 (-)
XLOC_008970 NA non-coding upstream 199929 4163578 ~ 4174873 (-)
XLOC_008973 CU467614.1 non-coding upstream 401509 4365158 ~ 4365272 (-)
XLOC_008997 FO704791.1 non-coding upstream 1419413 5383062 ~ 5383180 (-)
XLOC_009008 NA non-coding upstream 1934761 5898410 ~ 5901982 (-)
XLOC_009014 NA non-coding upstream 3004732 6968381 ~ 6976921 (-)

Expression


Co-expression Network