Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_008968 |
| gene name | rnf168 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 4101254 ~ 4124099 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| rnf168 | Predicted to enable several functions, including K63-linked polyubiquitin modification-dependent protein binding activity; ubiquitin binding activity; and ubiquitin-protein transferase activity. Predicted to be involved in several processes, including DNA metabolic process; histone H2A ubiquitination; and regulation of nucleobase-containing compound metabolic process. Predicted to act upstream of or within DNA repair and chromatin organization. Predicted to be located in nucleus and site of double-strand break. Predicted to be part of ubiquitin ligase complex. Human ortholog(s) of this gene implicated in RIDDLE syndrome. Orthologous to human RNF168 (ring finger protein 168). |
| id | name | namespace |
|---|---|---|
| GO:0006302 | double-strand break repair | biological_process |
| GO:0006325 | chromatin organization | biological_process |
| GO:0045739 | positive regulation of DNA repair | biological_process |
| GO:0035518 | histone H2A monoubiquitination | biological_process |
| GO:0070535 | histone H2A K63-linked ubiquitination | biological_process |
| GO:0036351 | histone H2A-K13 ubiquitination | biological_process |
| GO:0036352 | histone H2A-K15 ubiquitination | biological_process |
| GO:0006974 | cellular response to DNA damage stimulus | biological_process |
| GO:0034244 | negative regulation of transcription elongation from RNA polymerase II promoter | biological_process |
| GO:0045190 | isotype switching | biological_process |
| GO:0010212 | response to ionizing radiation | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0033522 | histone H2A ubiquitination | biological_process |
| GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
| GO:0006281 | DNA repair | biological_process |
| GO:0035861 | site of double-strand break | cellular_component |
| GO:0000151 | ubiquitin ligase complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0042393 | histone binding | molecular_function |
| GO:0070530 | K63-linked polyubiquitin modification-dependent protein binding | molecular_function |
| GO:0016740 | transferase activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| GO:0003682 | chromatin binding | molecular_function |
| GO:0043130 | ubiquitin binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-6013 | Predicted to enable several functions, including K63-linked polyubiquitin modification-dependent protein binding activity; ubiquitin binding activity; and ubiquitin-protein transferase activity. Predicted to be involved in several processes, including DNA metabolic process; histone H2A ubiquitination; and regulation of nucleobase-containing compound metabolic process. Predicted to act upstream of or within DNA repair and chromatin organization. Predicted to be located in nucleus and site of double-strand break. Predicted to be part of ubiquitin ligase complex. Human ortholog(s) of this gene implicated in RIDDLE syndrome. Orthologous to human RNF168 (ring finger protein 168). |
| ensembl_id | ENSDARG00000100395 ENSDARG00000112483 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00017688 | False | 5619 | mRNA | 0.43 | 7 | 4101254 | 4124099 |
| TCONS_00017689 | True | 119 | rRNA | 0.47 | 1 | 4104408 | 4104526 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_008967 | si:dkey-83h2.3 | coding | downstream | 6366 | 4085623 ~ 4094888 (-) |
| XLOC_008966 | CR626884.2 | coding | downstream | 34096 | 4062000 ~ 4067158 (-) |
| XLOC_008965 | CR626884.5 | coding | downstream | 48105 | 4049222 ~ 4053149 (-) |
| XLOC_008964 | P2RY14 | coding | downstream | 63628 | 4036709 ~ 4037626 (-) |
| XLOC_008963 | CR626884.6 | coding | downstream | 73887 | 4018362 ~ 4027367 (-) |
| XLOC_008969 | ANO7 | coding | upstream | 4461 | 4128560 ~ 4152582 (-) |
| XLOC_008970 | NA | coding | upstream | 39479 | 4163578 ~ 4174873 (-) |
| XLOC_008971 | ece2b | coding | upstream | 48189 | 4172288 ~ 4314097 (-) |
| XLOC_008972 | atp1b3b | coding | upstream | 229062 | 4353161 ~ 4415917 (-) |
| XLOC_008973 | CU467614.1 | coding | upstream | 241059 | 4365158 ~ 4365272 (-) |
| XLOC_008957 | NA | non-coding | downstream | 340297 | 3754566 ~ 3760957 (-) |
| XLOC_008952 | NA | non-coding | downstream | 938795 | 3160438 ~ 3162459 (-) |
| XLOC_008951 | NA | non-coding | downstream | 984992 | 3115337 ~ 3116262 (-) |
| XLOC_008946 | CABZ01086029.1 | non-coding | downstream | 1170233 | 2918257 ~ 2931021 (-) |
| XLOC_008942 | NA | non-coding | downstream | 1285112 | 2813516 ~ 2816142 (-) |
| XLOC_008997 | FO704791.1 | non-coding | upstream | 1258963 | 5383062 ~ 5383180 (-) |
| XLOC_009008 | NA | non-coding | upstream | 1774311 | 5898410 ~ 5901982 (-) |
| XLOC_009014 | NA | non-coding | upstream | 2844282 | 6968381 ~ 6976921 (-) |
