XLOC_008976 (eif4h)


Basic Information

Item Value
gene id XLOC_008976
gene name eif4h
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 4585266 ~ 4616928 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017706
CAATTAAACGCGCGCGTTACATTTAAGCATTTACACAATATAAAAGCCGTCCGCGTTTAGATGTATTGTATAAAATTCAAAGGATGATTTGTCAGGCACGCGGAGGTCAGCTAAATCTCGCAGCCGTATATTTTGGGGTCCTTCAGCGTCAGACTGCTGCTTTCTCTGAACAGCATCTTCGGCAATGGCGGATTACGATAACTACGATGACCGGGATCGGGCGTACGGGAGCTTTGGCGGTGGAAGAGGacCCCGAGGTGGTGGTGGCCCAAGCGGACCCCGAAAGCAGAAGGAACTTCCCACAGAGCCTCCTTACACAGCGTACGTTGGCAACCTGCCCTTCAACACAGTGCAAGGAGACATAGATGCCATTTTCAGAGACCTCAGCGTCAGGAGCGTTCGACTAGTCCGAGACAAAGAGACAGACAAGTTCAAAGGTTTCTGTTATGTGGAGTTTGACGACTTGGAATCTCTGAAAGAGGCTTTGACATATGACGGTGCCCTGTTAGGAGATCGATCTTTGAGGGTGGACATCGCAGAGGGCCGAAGGCAAGAACGTGGCGGCGGAGGCTTTGGCTTCCGGAAAGACGACAGAGGCCGCGGTGGCTCCCGTGGGGCCCGAGGAGGGGGACGAGACTCCAGAGAAGACTTCGACCAGTCTGGAGGAGgATTTAGAGATGATGACTTCATGGGTGGGAGGAGTCGAGGAGGCGGTCGCCCTGGCGACAGAAGGGGGGGTGCAGGAGGTGGAGGTGGTGGCGGCGGCGGCATGGGACGCTTCAGAGATGGACCTCCTCGAGGAGGCCAGACAGACTTCAGAGAACCATCTGATGagGAAAGAGCGCAGAGACCAAGGCTACAGCTGAAGCCACGTACAGTGGCAGGTCCCCTTAACCAAGTGGCCAACCCCAACTCGGCCATCTTTGGGGGTGCCAAACCCAGGGAGGAGAATTAATATCTGTGTCAGTGTGGCTGCATTATTCCGGAAGGCTATACTGGATCCTGGCTTTGATCACCATAAAATCTTTCAAAGACGTCTCCCAGCGGCACGCAGGCAGAGGCACGAGGTGCTGGTCTCCTCTCGAATCCAAACGAGCCCTCTTCCgattggcttttaaaaaaaaaaaaagcttgtggaGGTGGGTCTTCTAGAACGGGGCGGGGCATAGTCTTAACTCCGCCTCTGCCTGTTTTTGCTGACTCCTCCCACACGCCTCAGAGAACCCTAACTTGGAGGACAACTCCATTTCCAGGTTGATACCATTGTGTTTAAGGACTTCAAGATCTCTTTCCCTTTCCAAAGTATCTTTGTGTTTCGAATTTGTAGACGCGTGGGCATAAAAGCCGCCGTGTCATTTTATATTTTGCTCTTTAAATTTCTTTACtgtatttgaaaattaaaaaaaccgACAACAACGTTGAGCTTGATTCTTAATTAAACCATTTCAAAGTGAagagctttttattttatttttatttttgacttcTTGCTTTTGTCTTTATGAAAGATTTTTCGCAGCTTGACCAAATTTGGCTCATCCAGAGCTTTCAGGAACAATGTGCCACATCTATCTCACTCATTTAGAAGAGCACCGTTGCATGCATGATAGGTTTGGTTGGTGACACATGGGTCTACAGTCTACAGCAGCATCCACCTCTTGACGCCAATGCATTTCTTTACAGGAACAGTAGAAGCTATGGTCCATAACATCATGTTTACTGCCTTTCCAAGCTTATTGAACACAAATGAACTGCTCACACATGTCCAGACACACCAGGCGCTGTAGTTTCATCTCTAGTGGATCGAGTGTAGAGCCCTCATGGGGAAATCCATGCCGCAAAACCCTTCTCTTCACGATTTACTGGATCTAAATGAGGAAGCTCATTATTTTTTGGTTTTCTTACTGTACTATAGAGGTCggctgtttttattcattggTTTTTCATTTTCCTACACTGTTTACGGCAATAAATTGTATCATCTTACAGTGTTTGAAATGAATGTGTTGACATGGGATGATTTTATTCTGTGTCCTGTGATGCTATACGGTGTTTAACTCGTTTAAATGAAAGAAATGTTTCATCCAAATTCAACCTTTCGGTTGGTTTATCGCCGCAGCTTCAAGCTTTGGGGAATTGTCATTGAACTTCACCAACAAGGTAACCGAACTTATCAGTGCCACACAGCATTTTGGCTGAGTCAACAATGATCTATACACTGAAGCAAACACAGGAAGGTTTTGGAGACACGTGATGAGTGATTGTTTTGCATATGTGAAGAAGAATAAAAGATTTCAAGAGGAGAATCTGGGTTTGGGGTGTGAATGATCTAAACACAGTGACTATTTAGCGGGGGAAACAATCTTCTGATGAATTAACCCTTGTGCACGGTTCAACTGTAAAACCtagcagtcaactttatcaaaagaaatgagtgtag
>TCONS_00017708
AAATCTCGCAGCCGTATATTTTGGGGTCCTTCAGCGTCAGACTGCTGCTTTCTCTGAACAGCATCTTCGGCAATGGCGGATTACGATAACTACGATGACCGGGATCGGGCGTACGGGAGCTTTGGCGGTGGAAGAGGacCCCGAGGTGGTGGTGGCCCAAGCGGACCCCGAAAGCAGAAGGAACTTCCCACAGAGCCTCCTTACACAGCGTACGTTGGCAACCTGCCCTTCAACACAGTGCAAGGAGACATAGATGCCATTTTCAGAGACCTCAGCGTCAGGAGCGTTCGACTAGTCCGAGACAAAGAGACAGACAAGTTCAAAGGTTTCTGTTATGTGGAGTTTGACGACTTGGAATCTCTGAAAGAGGCTTTGACATATGACGGTGCCCTGTTAGGAGATCGATCTTTGAGGGTGGACATCGCAGAGGGCCGAAGGCAAGAACGTGGCGGCGGAGGCTTTGGCTTCCGGAAAGACGACAGAGGCCGCGGTGGCTCCCGTGGGGCCCGAGGAGGGGGACGAGACTCCAGAGAAGACTTCGACCAGTCTGGAGGAGGTGCGGCGGGTGAAATGGagGAAAGAGCGCAGAGACCAAGGCTACAGCTGAAGCCACGTACAGTGGCAGGTCCCCTTAACCAAGTGGCCAACCCCAACTCGGCCATCTTTGGGGGTGCCAAACCCAGGGAGGAGAATTAATATCTGTGTCAGTGTGGCTGCATTATTCCGGAAGGCTATACTGGATCCTGGCTTTGATCACCATAAAATCTTTCAAAGACGTCTCCCAGCGGCACGCAGGCAGAGGCACGAGGTGCTGGTCTCCTCTCGAATCCAAACGAGCCCTCTTCCgattggcttttaaaaaaaaaaaaagcttgtggaGGTGGGTCTTCTAGAACGGGGCGGGGCATAGTCTTAACTCCGCCTCTGCCTGTTTTTGCTGACTCCTCCCACACGCCTCAGAGAACCCTAACTTGGAGGACAACTCCATTTCCAGGTTGATACCATTGTGTTTAAGGACTTCAAGATCTCTTTCCCTTTCCAAAGTATCTTTGTGTTTCGAATTTGTAGACGCGTGGGCATAAAAGCCGCCGTGTCATTTTATATTTTGCTCTTTAAATTTCTTTACtgtatttgaaaattaaaaaaaccgACAACAACGTTGAGCTTGATTCTTAATTAAACCATTTCAAAGTGAagagctttttattttatttttatttttgacttcTTGCTTTTGTCTTTATGAAAGATTTTTCGCAGCTTGACCAAATTTGGCTCATCCAGAGCTTTCAGGAACAATGTGCCACATCTATCTCACTCATTTAGAAGAGCACCGTTGCATGCATGATAGGTTTGGTTGGTGACACATGGGTCTACAGTCTACAGCAGCATCCACCTCTTGACGCCAATGCATTTCTTTACAGGAACAGTAGAAGCTATGGTCCATAACATCATGTTTACTGCCTTTCCAAGCTTATTGAACACAAATGAACTGCTCACACATGTCCAGACACACCAGGCGCTGTAGTTTCATCTCTAGTGGATCGAGTGTAGAGCCCTCATGGGGAAATCCATGCCGCAAAACCCTTCTCTTCACGATTTACTGGATCTAAATGAGGAAGCTCATTATTTTTTGGTTTTCTTACTGTACTATAGAGGTCggctgtttttattcattggTTTTTCATTTTCCTACACTGTTTACGGCAATAAATTGTATCATCTTACAGTGTTTGAAATGAATGTGTTGACATGGGATGATTTTATTCTGTGTCCTGTGATGCTATACGGTGTTTAACTCGTTTAAATGAAAGAAATGTTTCATCCAAATTCAACCTTTCGGTTGGTTTATCGCCGCAGCTTCAAGCTTTGGGGAATTGTCATTGAACTTCACCAACAAGGTAACCGAACTTATCAGTGCCACACAGCATTTTGGCTGAGTCAACAATGATCTATACACTGAAGCAAACACAGGAAGGTTTTGGAGACACGTGATGAGTGATTGTTTTGCATATGTGAAGAAGAATAAAAGATTTCAAGAGGAGA
>TCONS_00017707
AAATCTCGCAGCCGTATATTTTGGGGTCCTTCAGCGTCAGACTGCTGCTTTCTCTGAACAGCATCTTCGGCAATGGCGGATTACGATAACTACGATGACCGGGATCGGGCGTACGGGAGCTTTGGCGGTGGAAGAGGacCCCGAGGTGGTGGTGGCCCAAGCGGACCCCGAAAGCAGAAGGAACTTCCCACAGAGCCTCCTTACACAGCGTACGTTGGCAACCTGCCCTTCAACACAGTGCAAGGAGACATAGATGCCATTTTCAGAGACCTCAGCGTCAGGAGCGTTCGACTAGTCCGAGACAAAGAGACAGACAAGTTCAAAGGTTTCTGTTATGTGGAGTTTGACGACTTGGAATCTCTGAAAGAGGCTTTGACATATGACGGTGCCCTGTTAGGAGATCGATCTTTGAGGGTGGACATCGCAGAGGGCCGAAGGCAAGAACGTGGCGGCGGAGGCTTTGGCTTCCGGAAAGACGACAGAGGCCGCGGTGGCTCCCGTGGGGCCCGAGGAGGGGGACGAGACTCCAGAGAAGACTTCGACCAGTCTGGAGGAGGTGCGGCGGGTGAAATGGgATTTAGAGATGATGACTTCATGGGTGGGAGGAGTCGAGGAGGCGGTCGCCCTGGCGACAGAAGGGGGGGTGCAGGAGGTGGAGGTGGTGGCGGCGGCGGCATGGGACGCTTCAGAGATGGACCTCCTCGAGGAGGCCAGACAGACTTCAGAGAACCATCTGATGagGAAAGAGCGCAGAGACCAAGGCTACAGCTGAAGCCACGTACAGTGGCAGGTCCCCTTAACCAAGTGGCCAACCCCAACTCGGCCATCTTTGGGGGTGCCAAACCCAGGGAGGAGAATTAATATCTGTGTCAGTGTGGCTGCATTATTCCGGAAGGCTATACTGGATCCTGGCTTTGATCACCATAAAATCTTTCAAAGACGTCTCCCAGCGGCACGCAGGCAGAGGCACGAGGTGCTGGTCTCCTCTCGAATCCAAACGAGCCCTCTTCCgattggcttttaaaaaaaaaaaaagcttgtggaGGTGGGTCTTCTAGAACGGGGCGGGGCATAGTCTTAACTCCGCCTCTGCCTGTTTTTGCTGACTCCTCCCACACGCCTCAGAGAACCCTAACTTGGAGGACAACTCCATTTCCAGGTTGATACCATTGTGTTTAAGGACTTCAAGATCTCTTTCCCTTTCCAAAGTATCTTTGTGTTTCGAATTTGTAGACGCGTGGGCATAAAAGCCGCCGTGTCATTTTATATTTTGCTCTTTAAATTTCTTTACtgtatttgaaaattaaaaaaaccgACAACAACGTTGAGCTTGATTCTTAATTAAACCATTTCAAAGTGAagagctttttattttatttttatttttgacttcTTGCTTTTGTCTTTATGAAAGATTTTTCGCAGCTTGACCAAATTTGGCTCATCCAGAGCTTTCAGGAACAATGTGCCACATCTATCTCACTCATTTAGAAGAGCACCGTTGCATGCATGATAGGTTTGGTTGGTGACACATGGGTCTACAGTCTACAGCAGCATCCACCTCTTGACGCCAATGCATTTCTTTACAGGAACAGTAGAAGCTATGGTCCATAACATCATGTTTACTGCCTTTCCAAGCTTATTGAACACAAATGAACTGCTCACACATGTCCAGACACACCAGGCGCTGTAGTTTCATCTCTAGTGGATCGAGTGTAGAGCCCTCATGGGGAAATCCATGCCGCAAAACCCTTCTCTTCACGATTTACTGGATCTAAATGAGGAAGCTCATTATTTTTTGGTTTTCTTACTGTACTATAGAGGTCggctgtttttattcattggTTTTTCATTTTCCTACACTGTTTACGGCAATAAATTGTATCATCTTACAGTGTTTGAAATGAATGTGTTGACATGGGATGATTTTATTCTGTGTCCTGTGATGCTATACGGTGTTTAACTCGTTTAAATGAAAGAAATGTTTCATCCAAATTCAACCTTTCGGTTGGTTTATCGCCGCAGCTTCAAGCTTTGGGGAATTGTCATTGAACTTCACCAACAAGGTAACCGAACTTATCAGTGCCACACAGCATTTTGGCTGAGTCAACAATGATCTATACACTGAAGCAAACACAGGAAGGTTTTGGAGACACGTGATGAGTGATTGTTTTGCATATGTGAAGAAGAATAAAAGATTTCAAGAGGAGA
>TCONS_00017709
GCCGCGGTGGCTCCCGTGGGGCCCGAGGAGGGGGACGAGACTCCAGAGAAGACTTCGACCAGTCTGGAGGAGGTGCGGCGGGTGAAATGGgATTTAGAGATGATGACTTCATGGGTGGGAGGAGTCGAGGAGGCGGTCGCCCTGGCGACAGAAGGGGGGGTGCAGGAGGTGGAGGTGGTGGCGGCGGCGGCATGGGACGCTTCAGAGATGGACCTCCTCGAGGAGGCCAGACAGACTTCAGAGAACCATCTGATGagGAAAGAGCGCAGAGACCAAGGCTACAGCTGAAGCCACGTACAGTGGCAGGTCCCCTTAACCAAGTGGCCAACCCCAACTCGGCCATCTTTGGGGGTGCCAAACCCAGGGAGGAGAATTAATATCTGTGTCAGTGTGGCTGCATTATTCCGGAAGGCTATACTGGATCCTGGCTTTGATCACCATAAAATCTTTCAAAGACGTCTCCCAGCGGCACGCAGGCAGAGGCACGAGGTGCTGGTCTCCTCTCGAATCCAAACGAGCCCTCTTCCgattggcttttaaaaaaaaaaaaagcttgtggaGGTGGGTCTTCTAGAACGGGGCGGGGCATAGTCTTAACTCCGCCTCTGCCTGTTTTTGCTGACTCCTCCCACACGCCTCAGAGAACCCTAACTTGGAGGACAACTCCATTTCCAGGTTGATACCATTGTGTTTAAGGACTTCAAGATCTCTTTCCCTTTCCAAAGTATCTTTGTGTTTCGAATTTGTAGACGCGTGGGCATAAAAGCCGCCGTGTCATTTTATATTTTGCTCTTTAAATTTCTTTACtgtatttgaaaattaaaaaaaccgACAACAACGTTGAGCTTGATTCTTAATTAAACCATTTCAAAGTGAa

Function

symbol description
eif4h Predicted to enable RNA strand annealing activity; RNA strand-exchange activity; and ribosomal small subunit binding activity. Predicted to be involved in eukaryotic translation initiation factor 4F complex assembly and formation of translation preinitiation complex. Predicted to be located in perinuclear region of cytoplasm. Human ortholog(s) of this gene implicated in Williams-Beuren syndrome. Orthologous to human EIF4H (eukaryotic translation initiation factor 4H).

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0097010 eukaryotic translation initiation factor 4F complex assembly biological_process
GO:0043024 ribosomal small subunit binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0034057 RNA strand-exchange activity molecular_function
GO:0033592 RNA strand annealing activity molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis
ko03012 Translation factors

ZFIN:

id description
ZDB-GENE-010328-19 Predicted to enable RNA strand annealing activity; RNA strand-exchange activity; and ribosomal small subunit binding activity. Predicted to be involved in eukaryotic translation initiation factor 4F complex assembly and formation of translation preinitiation complex. Predicted to be located in perinuclear region of cytoplasm. Human ortholog(s) of this gene implicated in Williams-Beuren syndrome. Orthologous to human EIF4H (eukaryotic translation initiation factor 4H).

Ensembl:

ensembl_id ENSDARG00000042252

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017706 False 2440 mRNA 0.47 8 4585266 4616928
TCONS_00017708 False 2046 mRNA 0.46 7 4585401 4616816
TCONS_00017707 False 2211 mRNA 0.47 8 4585401 4616816
TCONS_00017709 True 877 mRNA 0.52 4 4586251 4596623

Neighbor

gene id symbol gene type direction distance location
XLOC_008975 rffl coding downstream 4503 4549240 ~ 4580763 (-)
XLOC_008974 tfdp2 coding downstream 56879 4421797 ~ 4528387 (-)
XLOC_008972 atp1b3b coding downstream 169349 4353161 ~ 4415917 (-)
XLOC_008973 CU467614.1 coding downstream 219994 4365158 ~ 4365272 (-)
XLOC_008971 ece2b coding downstream 271169 4172288 ~ 4314097 (-)
XLOC_008977 lipt2 coding upstream 340856 4957784 ~ 4969525 (-)
XLOC_008978 defbl3 coding upstream 394152 5011080 ~ 5016039 (-)
XLOC_008979 or128-10 coding upstream 538209 5155137 ~ 5157572 (-)
XLOC_008980 or126-7 coding upstream 545346 5162274 ~ 5165013 (-)
XLOC_008981 or126-5 coding upstream 550762 5167690 ~ 5172170 (-)
XLOC_008970 NA non-coding downstream 410393 4163578 ~ 4174873 (-)
XLOC_008957 NA non-coding downstream 824309 3754566 ~ 3760957 (-)
XLOC_008952 NA non-coding downstream 1422807 3160438 ~ 3162459 (-)
XLOC_008951 NA non-coding downstream 1469004 3115337 ~ 3116262 (-)
XLOC_008997 FO704791.1 non-coding upstream 766134 5383062 ~ 5383180 (-)
XLOC_009008 NA non-coding upstream 1281482 5898410 ~ 5901982 (-)
XLOC_009014 NA non-coding upstream 2351453 6968381 ~ 6976921 (-)
XLOC_009015 CR396585.2 non-coding upstream 2391894 7008822 ~ 7008938 (-)
XLOC_009016 CR396585.1 non-coding upstream 2415169 7032097 ~ 7034722 (-)

Expression


Co-expression Network