XLOC_008977 (lipt2)


Basic Information

Item Value
gene id XLOC_008977
gene name lipt2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 4957784 ~ 4969525 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017710
GTGTACTGGAGGCATGGCAGCGTACACTGATGCTTTATAACCCCATCTAAAGACACAATGTCGGTCACAAAAGCAGCTGTCAAAGCGGTTCATCTAGGAAGGATCTCCTACCACAGTGCCTTGAAAATACAGCAGCAGCACATACAGCAGCATCTGGATTCATCCAGCAACATCCCAAACACGTTATTACTCTGCGAACACGAGCCGGTGTACACCATCGGTCTCAGACAGGCTCCGTACCCACCAGCAGAGGAGCAGAGACTGAAGGCTCTGGGTGCAGATTTCTGCCGCACCAACAGAGGAGGACTCATTACTTTCCACGGGCCGGGACAGCTGGTCTGTTACCCCATCCTCAACCTGGGCTGCTTCAAGAAGAGCGTGAGATGGTACGTGTGTGAACTGGAAAGGACCGTGATCAAGATGTGCGGTAAATTTGGGATTAAAGCCTCAACTTCTCCGGATACTGGAGTCTGGGTGGGAGACAACAAAATCTGCGCAATTGGCATCCATTGTGGAAGATACATCACCTCCCATGGTTTGGCTCTGAACTGCAACACAGACATGAGCTGGTTTGACAACATTGTGCCATGTGGGATTGTGGGAAAAGGTGTGACCTCACTGAGCCAAGAGCTGGAGCGGGATGTCCCCCCTGAAGAGGCCATACCCGAGCTACTAGAAGCCTTCACTGAACAATTTAACTGCACTTTGACTTATAATGGTAGCTTGAGTTGAAACACATTCAAGACTGTTTcactgtaatatattttttttttattaaaaagtttaaac
>TCONS_00017711
CATACTTATTAATACAGTTAATAATGTATCTAAACAAAGTGCTCTATATATTAGGCCTATAGACATTTTTCCTCAACACTATAAAAAAGACGCAGTTTAGTAGGTGTCGCACCAAACCGGTAGGTGGCAGTAATGCATCAGGTATTTCGCCTTCACCCTCACCCTCTGGAGTTAAAGCAGAGTAAGAGGTGTACTGGAGGCATGGCAGCGTACAGTAAGAAATGACAGTTCTTTTACTAATTTTTCGGGGTTTTGAGCGTTCAGCATcagtttatgtttatttttcctGTATTCGATGGATCTGTTGTTAAAGGTGGTGTCAAATCAGGAAATTACAGTTAGTAATTGCTTACTCATAAAATGCTTCAGCTGATGCTTTATAACCCCATCTAAAGACACAATGTCGGTCACAAAAGCAGCTGTCAAAGCGGTTCATCTAGGAAGGATCTCCTACCACAGTGCCTTGAAAATACAGCAGCAGCACATACAGCAGCATCTGGATTCATCCAGCAACATCCCAAACACGTTATTACTCTGCGAACACGAGCCGGTGTACACCATCGGTCTCAGACAGGCTCCGTACCCACCAGCAGAGGAGCAGAGACTGAAGGCTCTGGGTGCAGATTTCTGCCGCACCAACAGAGGAGGACTCATTACTTTCCACGGGCCGGGACAGCTGGTCTGTTACCCCATCCTCAACCTGGGCTGCTTCAAGAAGAGCGTGAGATGGTACGTGTGTGAACTGGAAAGGACCGTGATCAAGATGTGCGGTAAATTTGGGATTAAAGCCTCAACTTCTCCGGATACTGGAGTCTGGGTGGGAGACAACAAAATCTGCGCAATTGGCATCCATTGTGGAAGATACATCACCTCCCATGGTTTGGCTCTGAACTGCAACACAGACATGAGCTGGTTTGACAACATTGTGCCATGTGGGATTGTGGGAAAAGGTGTGACCTCACTGAGCCAAGAGCTGGAGCGGGATGTCCCCCCTGAAGAGGCCATACCCGAGCTACTAGAAGCCTTCACTGAACAATTTAACTGCACTTTGACTTATAATGGTAGCTTGAGTTGA
>TCONS_00017712
GCAGCGCTCTGGGTGGCTGAGCCGAACGAGCTCCCACAGTTCGGCGTTGACCAGGCTCTTCTCCCGGGACTGTTTACGGGCCCAGCTGGACACTCGCAACCGGCACAGCGGACAGCACAGGCTGATCAACTTCACCGTCCGCTGGAAACAATGCAGGCACACCGAGTGGCCGCACGGCATCGTGACCGGCTCCAGGAGTATCTCCGAGCACACTGGGCACCGAGCCTCCTCCAGAGACAGCGGAGCTGAGAGCGCGCCAGGCCTGCTTTTGCTTCTCTGCCCCGGTCCAGTGGATTTGGCGGACCCCACCGCCGCCATCTTCATTGGTATGTGCCTGGGTTTGAAAACAAGCCCCGCCCGGCCATGACGTCACGTGCAGCTGTGGAGCGacaaatacaCTGATGCTTTATAACCCCATCTAAAGACACAATGTCGGTCACAAAAGCAGCTGTCAAAGCGGTTCATCTAGGAAGGATCTCCTACCACAGTGCCTTGAAAATACAGCAGCAGCACATACAGCAGCATCTGGATTCATCCAGCAACATCCCAAACACGTTATTACTCTGCGAACACGAGCCGGTGTACACCATCGGTCTCAGACAGGCTCCGTACCCACCAGCAGAGGAGCAGAGACTGAAGGCTCTGGGTGCAGATTTCTGCCGCACCAACAGAGGAGGACTCATTACTTTCCACGGGCCGGGACAGCTGGTCTGTTACCCCATCCTCAACCTGGGCTGCTTCAAGAAGAGCGTGAGATGGTACGTGTGTGAACTGGAAAGGACCGTGATCAAGATGTGCGGTAAATTTGGGATTAAAGCCTCAACTTCTCCGGATACTGGAGTCTGGGTGGGAGACAACAAAATCTGCGCAATTG

Function

symbol description
lipt2 Predicted to enable ligase activity; lipoyl(octanoyl) transferase activity; and octanoyl transferase activity (acting on glycine-cleavage complex H protein). Predicted to be involved in positive regulation of oxygen metabolic process and protein lipoylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in mitochondrion. Orthologous to human LIPT2 (lipoyl(octanoyl) transferase 2).

GO:

id name namespace
GO:0009249 protein lipoylation biological_process
GO:0006464 cellular protein modification process biological_process
GO:2000376 positive regulation of oxygen metabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0016415 octanoyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0102555 octanoyl transferase activity (acting on glycine-cleavage complex H protein) molecular_function
GO:0016874 ligase activity molecular_function
GO:0033819 lipoyl(octanoyl) transferase activity molecular_function

KEGG:

id description
ko00785 Lipoic acid metabolism

ZFIN:

id description
ZDB-GENE-060312-18 Predicted to enable ligase activity; lipoyl(octanoyl) transferase activity; and octanoyl transferase activity (acting on glycine-cleavage complex H protein). Predicted to be involved in positive regulation of oxygen metabolic process and protein lipoylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in mitochondrion. Orthologous to human LIPT2 (lipoyl(octanoyl) transferase 2).

Ensembl:

ensembl_id ENSDARG00000069852

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017710 False 789 mRNA 0.48 3 4957784 4967302
TCONS_00017711 False 1075 mRNA 0.46 3 4957841 4967490
TCONS_00017712 True 874 mRNA 0.57 2 4964771 4969525

Neighbor

gene id symbol gene type direction distance location
XLOC_008976 eif4h coding downstream 340856 4585266 ~ 4616928 (-)
XLOC_008975 rffl coding downstream 377021 4549240 ~ 4580763 (-)
XLOC_008974 tfdp2 coding downstream 429397 4421797 ~ 4528387 (-)
XLOC_008972 atp1b3b coding downstream 541867 4353161 ~ 4415917 (-)
XLOC_008973 CU467614.1 coding downstream 592512 4365158 ~ 4365272 (-)
XLOC_008978 defbl3 coding upstream 41555 5011080 ~ 5016039 (-)
XLOC_008979 or128-10 coding upstream 185612 5155137 ~ 5157572 (-)
XLOC_008980 or126-7 coding upstream 192749 5162274 ~ 5165013 (-)
XLOC_008981 or126-5 coding upstream 198165 5167690 ~ 5172170 (-)
XLOC_008982 or126-4 coding upstream 206068 5175593 ~ 5178899 (-)
XLOC_008970 NA non-coding downstream 782911 4163578 ~ 4174873 (-)
XLOC_008957 NA non-coding downstream 1196827 3754566 ~ 3760957 (-)
XLOC_008952 NA non-coding downstream 1795325 3160438 ~ 3162459 (-)
XLOC_008951 NA non-coding downstream 1841522 3115337 ~ 3116262 (-)
XLOC_008997 FO704791.1 non-coding upstream 413537 5383062 ~ 5383180 (-)
XLOC_009008 NA non-coding upstream 928885 5898410 ~ 5901982 (-)
XLOC_009014 NA non-coding upstream 1998856 6968381 ~ 6976921 (-)
XLOC_009015 CR396585.2 non-coding upstream 2039297 7008822 ~ 7008938 (-)
XLOC_009016 CR396585.1 non-coding upstream 2062572 7032097 ~ 7034722 (-)

Expression


Co-expression Network