XLOC_008986 (or128-8)


Basic Information

Item Value
gene id XLOC_008986
gene name or128-8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5202054 ~ 5203371 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017721
ACAGAAGAAGCGCtataatttactttaaatttttttaataatgcagtGATGACAATTTGAATTGTATTGATACAATGATAACAATGTATAATTTGAAGTAAAGCTTATGAGATCATATTTAAACTAAAGTATTGTTTTTTAAAGTGTTGAACTTTGTCTGCTCCTGTCCTCAGATCAAAGAGGTTATCATTTGCTTGTGTGAAAATGGATAATGGAACATACTTTTACTTCATGTTGTTTGAAAATCTTGGGTATATAAGATATGCTTTGTTCACTACAGGACTGATTCTGTactgtgttattatattatttaatgctgtcattattattactgtattttgtGGCCGTACATTACACCAGCCTATGTACATTCTGATTTCCTGCTTGTCTGTTAACTCTGTGTATGGAACAGCTGGCTTTTTTCCAAGAGTTCTGACTGACTTGTTGTCTGATACACACTTAATCTCCCGTGAAGCATGCGGCTTACAATCATTTGTCATTTACTCATACATAACAAATGAGAATACAATATTAATGCTAATGGCTCTTGACAGATTTGTTGCAATTAGTAAGCCTCTACAATATCACAACATAATTACTCCAAGGCTCCTGgctcttttatttcttttaaactgGGCATATTCAATGCTTTGTATTGGtgttattgctgtttttactTCAGGGCTGAAAATGTGTGGCAACAAACTATGGAAAGTGTACTGCCAAAACTATGAAGTTGTCAAGCTCTCTTGTGTAaatagcattattattaatatcatggGCTTGTATTTGCTGATAACAACTGTAATCATTCCTTTAAGTTTAATTATATATTCTTATGTGAAAATCCTAATCATTTGTCGAAGAAGTTCATCACAGTTCACAAGAAAATCTTTTCAAACGTGTGTTCCACACATAGTGGTGCTTATAAATGTTTCAGTTTCAGTCATATCTGAGATTACTTTGAGTCGAGTTGTCAATCTAAACATGTCTGTAGGGTTGTCAGTTTTTCTATCACTGGAGTTTCTTTTAATACCACCCATCCTCAATCCACTTGTTTATGGTTTAGGTTTGTCAGATATTCGCAGAAAAATATTTGCCTCAGCAAGGTATCCATGTAGATTACTCAAGGTGTAGGtttggctgtaaaaaaaaataataatgcaataatatggCAGCTTTGAGAAAATAACCCAAGCATTATATGCCTTTCATGCTACAGTGTACATGAAtttcaatatatattattttgaattATCAGAGATGTTAATGTACTTCATATTTATGACACATTAAATTAATATGGGCGACATGAAAA
>TCONS_00018810
ATGGATAATGGAACATACTTTTACTTCATGTTGTTTGAAAATCTTGGGTATATAAGATATGCTTTGTTCACTACAGGACTGATTCTGTactgtgttattatattatttaatgctgtcattattattactgtattttgtGGCCGTACATTACACCAGCCTATGTACATTCTGATTTCCTGCTTGTCTGTTAACTCTGTGTATGGAACAGCTGGCTTTTTTCCAAGAGTTCTGACTGACTTGTTGTCTGATACACACTTAATCTCCCGTGAAGCATGCGGCTTACAATCATTTGTCATTTACTCATACATAACAAATGAGAATACAATATTAATGCTAATGGCTCTTGACAGATTTGTTGCAATTAGTAAGCCTCTACAATATCACAACATAATTACTCCAAGGCTCCTGgctcttttatttcttttaaactgGGCATATTCAATGCTTTGTATTGGtgttattgctgtttttactTCAGGGCTGAAAATGTGTGGCAACAAACTATGGAAAGTGTACTGCCAAAACTATGAAGTTGTCAAGCTCTCTTGTGTAaatagcattattattaatatcatggGCTTGTATTTGCTGATAACAACTGTAATCATTCCTTTAAGTTTAATTATATATTCTTATGTGAAAATCCTAATCATTTGTCGAAGAAGTTCATCACAGTTCACAAGAAAATCTTTTCAAACGTGTGTTCCACACATAGTGGTGCTTATAAATGTTTCAGTTTCAGTCATATCTGAGATTACTTTGAGTCGAGTTGTCAATCTAAACATGTCTGTAGGGTTGTCAGTTTTTCTATCACTGGAGTTTCTTTTAATACCACCCATCCTCAATCCACTTGTTTATGGTTTAGGTTTGTCAGATATTCGCAGAAAAATATTTGCCTCAGCAAGGTATCCATGTAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-112 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000094462

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017721 False 1318 mRNA 0.32 1 5202054 5203371
TCONS_00018810 True 917 lncRNA 0.34 1 5202251 5203167

Neighbor

gene id symbol gene type direction distance location
XLOC_008985 or128-9 coding downstream 3863 5196715 ~ 5198191 (-)
XLOC_008984 or126-2 coding downstream 10382 5189408 ~ 5191672 (-)
XLOC_008983 or126-3 coding downstream 17868 5182854 ~ 5184186 (-)
XLOC_008982 or126-4 coding downstream 23155 5175593 ~ 5178899 (-)
XLOC_008981 or126-5 coding downstream 29884 5167690 ~ 5172170 (-)
XLOC_008987 or128-7 coding upstream 2167 5205538 ~ 5207805 (-)
XLOC_008988 or128-6 coding upstream 7097 5210468 ~ 5212930 (-)
XLOC_008989 or128-5 coding upstream 12436 5215807 ~ 5217706 (-)
XLOC_008990 or128-4 coding upstream 17621 5220992 ~ 5222924 (-)
XLOC_008991 or128-3 coding upstream 25209 5228580 ~ 5230423 (-)
XLOC_008973 CU467614.1 non-coding downstream 836782 4365158 ~ 4365272 (-)
XLOC_008970 NA non-coding downstream 1027181 4163578 ~ 4174873 (-)
XLOC_008957 NA non-coding downstream 1441097 3754566 ~ 3760957 (-)
XLOC_008952 NA non-coding downstream 2039595 3160438 ~ 3162459 (-)
XLOC_008951 NA non-coding downstream 2085792 3115337 ~ 3116262 (-)
XLOC_008997 FO704791.1 non-coding upstream 179691 5383062 ~ 5383180 (-)
XLOC_009008 NA non-coding upstream 695039 5898410 ~ 5901982 (-)
XLOC_009014 NA non-coding upstream 1765010 6968381 ~ 6976921 (-)
XLOC_009015 CR396585.2 non-coding upstream 1805451 7008822 ~ 7008938 (-)
XLOC_009016 CR396585.1 non-coding upstream 1828726 7032097 ~ 7034722 (-)

Expression


Co-expression Network