XLOC_008988 (or128-6)


Basic Information

Item Value
gene id XLOC_008988
gene name or128-6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5210468 ~ 5212930 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017723
TAACAGAAGTGCTACTGTAACTTCCTTCAGATTTTTTGATAATGCAGTGATGATTATTTTAACTGTCTGGATACAAGCATAATAATGCGATAATACTGCTTTAAGACAACaggaattttttaaatatgaactaaAGCTTAAAAAGATCATATTTAAGCTGAAGTATTGATATTTAAGGTGTCTGCTCTCTTCCTCAGATCAAAGAAGCTATCATTTGCTTGTGTGAAAATGGATAATGGAACATACTTTTACTTCATGTTTTTTGAAAATCTCGGGTATATAAGATATGCTTTGTTCACTTCAGGACTGATTCTGTactgtgttattatattattcaatgctgtcattattattactatattttggAACCGCACATTACACCAGCCTATGTACATTCTGATTTCCTGCTTGTCTGTTAACTCTGTGTATGGAACAGCTGGCTTTTTTCCAAGAGTTCTGATAGACTTGCTGTCTGATACACACTCAATCTCTCGTGAAGCATGCTTCTTACAATCTTTTgtcatttatacatacataacAAATGAGAATACAATCTTAATGCTAATGGCGCTTGACAGATTTGTTGCAATTAGTAAGCCTCTACAATACCACAACATAATTACAAAGAGGTTTCTGACTGTTTTATATCTTTCAAACTGGGCATATTCAGTGCTTTGTATCGGTATTGCTGCTATTTTTACTGCAGGGCTGAAATTGTGTGGCAACAAACTATGGAAAGTTTTCTGCCACAACTATGAAATTGCCAAGCTCTCTTGTGTAAATAGCCTTATTGTTAACATTATAGGCTTGTATGTGCTGGCAACAACTGTAATCATTCCTTTAAGTTTAATTATATATTCGTATGTGAAAATCCTAATCATTTGTCGAAGAAGTTCACCGCAGTTCAAGAAAAAATCTTTTCAAACGTGTGTTCCCCACATAGTGGTGCTTTTAAATTTCTCAGTTTCTGTCATATCTGAGATTACTTTGAGTCGAGTTGTCAATCTAAACATTTCTGTAGGGTTGTCAGTTTTTATATCACTGGAGTTTCTTTTAATACCACCCATCCTCAATCCACTTGTTTATGGGTTAAGTCTGTCAGATATTCGGAAGAAAAATATTTGCCTCAGAAAATTAACCAAGTAGATTACACAAACTAGTTTAGCTGTAAAAGAAAGTAAATGTGGTAACACTGTAGCTTTGGGAAAACAATCCAAGCATCATAATGTCATGCCTTTGATACTTTATATGAATTTCATAAGAATCagaaatgttaatgttatttatcGTTGTGGCATATTAAATTATTACGTTAACAggcatattaaaataaactgcATGATGCTGGAATGGCCaacaatctgaaatattgttatggCTTTTTAGTCTCTCTTCTTTGTCTGCTTTGGCACAGTCTAGATTGTAAAAAAGTGCTACAGATACAAGCATCAACTTAATTGAATGAATCAGttacaatataaaacataatgTGTTCTctaattatttttctatttcaaaAATCCAAGACTACATTTAGggtgtgtttaaaaataaaggttataattaTGGTCTTTGTATTTGGCCTGGCACATATTTATCTGAACTTGAGACTGTTGACATATCTGCTAGATGTTTAAGGTTATTGAGTCAAAGCAAGAGGTCTTGCTTTTCGCATTGCCAAAAGTGTGGAATAGTGGGAGATGAGGATAGTTGTcttttttcttacttttctttATATGTCTTCAGTTTCAAAGAGGAGTGTAAAACTACAATTCACCCCATAGTCTATTATGATTTCAACCAGGTAAGatttaacattatataataaGATTTATGACCAAATAAATGCTGATTTTGAGATCTCATATTTCTATAAGGCAAGGACTGAGCTTGTCCCTCGGTTTCTAAATAAACTGTGTTCCATCTATatagctattgaccttattctaaaatgcggaggTTCGCcttttttgcgattgttttaagACTTCCGACTCAGTCGCCTATAGGAGAAATAACTAGGAATAATAAttggcagaaaacagtcaaactatttgctctacaaacaaatgtttgcatgactgtacagaccaagtagaataatagaataagaaaatatcagtttgcaacataaaACAGCGAAACAAaccgtttttaatgtctaaaaatgaatggaagtgaatgagactggaagtttcgagccaaaaagattcaaatggctgcgcccgctcgtcggcggagaataaggtgaacaGCTGGGGTGGaatgggacaaaaattcagccctggcactgtagccacaccagcccaaaATACCACACCAACACAGCCCCACTCATGGAcatgcacattcactacttatattggtgtacagatggtgaaatattataagcagtaccatatgtagtagatatttaaacatttaacttatgtgactggaacaaaaacaacccgttTATAAAAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-110 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000105721

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017723 True 2463 mRNA 0.34 1 5210468 5212930

Neighbor

gene id symbol gene type direction distance location
XLOC_008987 or128-7 coding downstream 2663 5205538 ~ 5207805 (-)
XLOC_008986 or128-8 coding downstream 7097 5202054 ~ 5203371 (-)
XLOC_008985 or128-9 coding downstream 12277 5196715 ~ 5198191 (-)
XLOC_008984 or126-2 coding downstream 18796 5189408 ~ 5191672 (-)
XLOC_008983 or126-3 coding downstream 26282 5182854 ~ 5184186 (-)
XLOC_008989 or128-5 coding upstream 2877 5215807 ~ 5217706 (-)
XLOC_008990 or128-4 coding upstream 8062 5220992 ~ 5222924 (-)
XLOC_008991 or128-3 coding upstream 15650 5228580 ~ 5230423 (-)
XLOC_008992 or128-2 coding upstream 24666 5237596 ~ 5239536 (-)
XLOC_008993 or128-1 coding upstream 29910 5242840 ~ 5245752 (-)
XLOC_008973 CU467614.1 non-coding downstream 845196 4365158 ~ 4365272 (-)
XLOC_008970 NA non-coding downstream 1035595 4163578 ~ 4174873 (-)
XLOC_008957 NA non-coding downstream 1449511 3754566 ~ 3760957 (-)
XLOC_008952 NA non-coding downstream 2048009 3160438 ~ 3162459 (-)
XLOC_008951 NA non-coding downstream 2094206 3115337 ~ 3116262 (-)
XLOC_008997 FO704791.1 non-coding upstream 170132 5383062 ~ 5383180 (-)
XLOC_009008 NA non-coding upstream 685480 5898410 ~ 5901982 (-)
XLOC_009014 NA non-coding upstream 1755451 6968381 ~ 6976921 (-)
XLOC_009015 CR396585.2 non-coding upstream 1795892 7008822 ~ 7008938 (-)
XLOC_009016 CR396585.1 non-coding upstream 1819167 7032097 ~ 7034722 (-)

Expression


Co-expression Network