XLOC_008994 (or126-1)



Basic Information


Item Value
gene id XLOC_008994
gene name or126-1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5250954 ~ 5252673 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00017732
AACATAGAGATTGTCCGACACACACTGCATGTGATGCTGCCACTACTAAAGAATGAGACTATCGTAGTAGTGTTTACACTCTCTGGACTAAATGATACGATGGGAAacagatttgtgtttttttccttGACTGCACTGTATTATCCATTCATCGTGTTTTGCAACGTGACCATACTTTATGCTGTAATGATGCACAAAAAGCTTCATGAGCCAATGTTTTTCTTCATATGCAATCTGTGTGTGAATGCACTTTATGGCACTGTTGGCTTCTACCCCAAGTTCTTGTATGATTTATTATCCCAGGATCATGTGATTACTTATGCTGGATGCTTAATTCAGAtctttatcatttattcatctgTTTTATGTGACATTTCAACACTAACAGTGATGGCATATGACAGGTATGTGGCAATATGTAGACCACTGGAGTATCATTCCATAATGACAGACCAGAGAATTGTTGAATGTATTCTTTTCTGTTGGCTGACTCCATTTTTCTGCATGACTGTCCTTATTGGACTAACAGCTAGACTCACTTTATGTGGCTCTGCTATTGAAAAGCTATATTGTGAAAATTGGTCTGTTGTTAAACTCTCCTGTTTTTCTACGACTGTAAACAACGTGGTTGGGTATGTTATCATTATTGTATATTTCGGGCATGCCGTGTTGATATTTTGCTCGTACATTTATTTGGTTGTAAAATGCCGAAAGTCAACGGAGAGCAGGCACAAGTTCATACAAACGTGTGTGCCGCATCTGCTTGCATTGCTTAATGTAACTGTCGCATTGTTGTTTGATGTACTGTACAGTCGTTACGGCTCAAAGAGTTTGCCCCAGGATTTGCGCAATTTCATGTCTCTGGAATTTCTACTGGTTCCCCCCATGTTAAATCCTCTTATTTATGGATTAAATCTGACAAGACTAAGGAGGGAAGTCATgaggtgctttttaaaaaaataagtagatCCAACTGAATGAGTCATTTAAAAGCAAAACCTATTTTGATATCTTAATTAAGTTGCTTGTGAACATCTCTTTTAAAACAGTTTGTATTATGGATCTTGTACAATACTAAATACAATGTACAAATTTTGATAGATTTGGTCATTATTactaatttcatttatttgtttatttaataaaagaagcACATTTAAAA

Function


GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-99 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in olfactory epithelium.

Ensembl:

ensembl_id ENSDARG00000091929

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00017732 True 1162 mRNA 0.36 2 5250954 5252673

Neighbor


gene id symbol gene type direction distance location
XLOC_008993 or128-1 coding downstream 5202 5242840 ~ 5245752 (-)
XLOC_008992 or128-2 coding downstream 11418 5237596 ~ 5239536 (-)
XLOC_008991 or128-3 coding downstream 20531 5228580 ~ 5230423 (-)
XLOC_008990 or128-4 coding downstream 28030 5220992 ~ 5222924 (-)
XLOC_008989 or128-5 coding downstream 33248 5215807 ~ 5217706 (-)
XLOC_008995 or127-1 coding upstream 8976 5261649 ~ 5262942 (-)
XLOC_008996 or120-1 coding upstream 54455 5307128 ~ 5309213 (-)
XLOC_008997 FO704791.1 coding upstream 130389 5383062 ~ 5383180 (-)
XLOC_008998 arrb1 coding upstream 138061 5390734 ~ 5467477 (-)
XLOC_008999 atg16l2 coding upstream 242330 5495003 ~ 5524271 (-)
XLOC_008973 CU467614.1 non-coding downstream 885682 4365158 ~ 4365272 (-)
XLOC_008970 NA non-coding downstream 1076081 4163578 ~ 4174873 (-)
XLOC_008957 NA non-coding downstream 1489997 3754566 ~ 3760957 (-)
XLOC_008952 NA non-coding downstream 2088495 3160438 ~ 3162459 (-)
XLOC_008951 NA non-coding downstream 2134692 3115337 ~ 3116262 (-)
XLOC_009008 NA non-coding upstream 645737 5898410 ~ 5901982 (-)
XLOC_009014 NA non-coding upstream 1715708 6968381 ~ 6976921 (-)
XLOC_009015 CR396585.2 non-coding upstream 1756149 7008822 ~ 7008938 (-)
XLOC_009016 CR396585.1 non-coding upstream 1779424 7032097 ~ 7034722 (-)

Expression



Co-expression Network