XLOC_009011 (meis3)


Basic Information

Item Value
gene id XLOC_009011
gene name meis3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 6838039 ~ 6863317 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017765
GCGTTTGTAATGctcgagcgtgtgtgtgtgtgtgtatgtgataaGGAGGTGGGGGTGAGAGACCCCGTTGTGTTTTGACCCCCTAAACAACTCCCATTCTccatctctcactctctctctggtTTAAAGCTCCATCGCTCATCGTGGGGAGACGCATTCGAGCCCAACGCGTCGCTTCATAGACATCAGTAGCGCGAAAAGGACCCGACATCATCCCAAACGCGCCGCTAATGCTGGATACTCGGCCCGGTTCACGCTTCTGCTGCTACGTTCTTATTAAGTTATTGTAGAGTATCTCCCGGTCTGACGTGTGTTGTCCTCCGTCAGTGAGTGTGTGAGCTCGGCTTCCGTATCGCATGGATAAGAGGTATGAGGAGTTGGTGCAGTACCCAGGCTCTGACGCCATGCCTGTGGGAGGCTACAGGGACACCATGAGGTCACTTCCTCCACCTCACTATGGCCACACTGTGCCTGACTCTCTGAAACACCACCGGGACCAGATCTATGGTCATCCTCTGTTTCCTCTCCTGGCTCTCGTATTTGAAAAGTGTGAACTTGCCACTTGCTCACCACGAGACTCCACCTCCATGTCAAACCCCGCCCACCTCCCTGGGATGACCAATCACAGTGATGTCTGCTCCTCTGACTCGTTCAACGATGATATTGCAGCCTTTGCCAAACAAATTCGATCAGAGAAACCCATATTTTCATCAAATCCAGAACTGGATAATCTGATGATCCAGGCCATTCAAGTTTTACGGTTTCATCTATTAGAACTAGAAAAGGTTCATGACCTCTGTGATAATTTCTGCCATCGCTACATCACCTGTCTAAAGGGTAAGATGCCCACTGATTTGGTGCTGGAAGACCGAGAGGGTGGATCTAAATCTGACATGGAAGACTTCACTGGTTCTTGTACAAGTCTGTCAGAACAAAATCAGTCTTGGTTGCGAGACCCAGATGACTGTGTGTCAACCCCCTCAGGGACCCCCAGTGCCTCCTGTGGGCTCAACTCACACAGTGTGGAGAACTGCAGTGATGCTgGTGATGGGTTGGATGGAAGTGTGGCTTCTCCCAGTACAGGAGAAGAAGATGAATCAGACAGAGACAGGCGAAACAACAAGAAAAGAGGAATCTTTCCCAAAGTTGCAACTAACATTATGAGAGCTTGGCTCTTTCAGCACCTGTCGCATCCGTACCCATCTGAGGAACAGAAAAAACAGCTCTCGCAGGACACAGGTCTCACCATACTGCAGGTCAATAACTGGTTTATAAATGCCAGACGCAGAATAGTCCAGCCAATGATTGACCAAACAAATCGCTCagGCCAGAGTGCTCCGTACAGTCCAGAAGGGGCAGCACTAGGAGGATATGGTTTAGATGCTCAGTCCCATTTAGGTTTAAGGACTGCAGGACTTCAGGGACTGCCATCCCTGCCCACAGATTACCCCGGGGCACTTCTGCCCCAACCTGGATACTCTCACGCAGGCCCGTCTTTGCACCCCTACCCCGGCCCACACACTGCCATGCTGCTTCATCCACCCCCTCATAGCCACCCCAGCGAAACCCTCATAGGACAAGGGCTTGACATACATGCCCACTGAGGGATGGAAGGGTACATTGTAATCGGACTTTGCAGTACCACAGCCCACTACCCTCAGCAAACCTTCAGGGCATCACCACAAAATGACTATGAGAATGTCTTAAATGCACTGACCTGGCATCATAAATGTATCGAAATGTTCATTTTATGCACTCAGCTCCCACGCGATGCCCATTCCAAATGCCTGACAGACTTGTTACATTCCTTATCAACATTTATTACTATCATCTCATTGCTCTTGATGCACTGTACTCAATTCAGTATTTACTAGTTGTAATGCACATTGCTGCATTTGATTGGATACACCCATGTCTTCCTATGGCCTTAAGGGCGATATGAAATCTCCCTTAATCTAACATTAAGGCCTTCATTGCCTTTCTTGCCTTGCCTCCGAAAACCCTTTTTGAGGAGCACAAACGGAAAACAGCATATACCTCCTCATTCAGGACTCAAATATATCAGAAAGTCCTGAAATTGTCTTCTGAGATAAACAACTGCACCAAATCCTGCTGAACATGGTTAATAAAGTGTAAAGGGTGGAGCTCATGAAACATGACCAGGTCACTTTCCATCCCCAAATTTAAAGGTTTTGCACTGGAAAGCTATTGTGAGAAAAttgatacagtttttttttcttttcttcagatAATTAAGAAACATTTCCAATGATGTTATTCCCTCTcgcattttatttgattattattccttttttttcctcAGTAAATGAGTTTATTGaagtaaaaagaaaaagattCTTTTGAGTTTGGAGG
>TCONS_00017766
GCGTTTGTAATGctcgagcgtgtgtgtgtgtgtgtatgtgataaGGAGGTGGGGGTGAGAGACCCCGTTGTGTTTTGACCCCCTAAACAACTCCCATTCTccatctctcactctctctctggtTTAAAGCTCCATCGCTCATCGTGGGGAGACGCATTCGAGCCCAACGCGTCGCTTCATAGACATCAGTAGCGCGAAAAGGACCCGACATCATCCCAAACGCGCCGCTAATGCTGGATACTCGGCCCGGTTCACGCTTCTGCTGCTACGTTCTTATTAAGTTATTGTAGAGTATCTCCCGGTCTGACGTGTGTTGTCCTCCGTCAGTGAGTGTGTGAGCTCGGCTTCCGTATCGCATGGATAAGAGGTATGAGGAGTTGGTGCAGTACCCAGGCTCTGACGCCATGCCTGTGGGAGGCTACAGGGACACCATGAGGTCACTTCCTCCACCTCACTATGGCCACACTGTGCCTGACTCTCTGAAACACCACCGGGACCAGATCTATGGTCATCCTCTGTTTCCTCTCCTGGCTCTCGTATTTGAAAAGTGTGAACTTGCCACTTGCTCACCACGAGACTCCACCTCCATGTCAAACCCCGCCCACCTCCCTGGGATGACCAATCACAGTGATGTCTGCTCCTCTGACTCGTTCAACGATGATATTGCAGCCTTTGCCAAACAAATTCGATCAGAGAAACCCATATTTTCATCAAATCCAGAACTGGATAATCTGATGATCCAGGCCATTCAAGTTTTACGGTTTCATCTATTAGAACTAGAAAAGGTTCATGACCTCTGTGATAATTTCTGCCATCGCTACATCACCTGTCTAAAGGGTAAGATGCCCACTGATTTGGTGCTGGAAGACCGAGAGGGTGGATCTAAATCTGACATGGAAGACTTCACTGGTTCTTGTACAAGTCTGTCAGAACAAAATCAGTCTTGGTTGCGAGACCCAGATGACTGTGTGTCAACCCCCTCAGGGACCCCCAGTGCCTCCTGTGGGCTCAACTCACACAGTGTGGAGAACTGCAGTGATGCTgGTGATGGGTTGGATGGAAGTGTGGCTTCTCCCAGTACAGGAGAAGAAGATGAATCAGACAGAGACAGGCGAAACAACAAGAAAAGAGGAATCTTTCCCAAAGTTGCAACTAACATTATGAGAGCTTGGCTCTTTCAGCACCTGTCGATCCGTACCCATCTGAGGAACAGAAAAAACAGCTCTCGCAGGACACAGGTCTCACCATACTGCAGGTCAATAACTGGTTTATAAATGCCAGACGCAGAATAGTCCAGCCAATGATTGACCAAACAAATCGCTCagGCCAGAGTGCTCCGTACAGTCCAGAAGGGGCAGCACTAGGAGGATATGGTTTAGATGCTCAGTCCCATTTAGGTTTAAGGACTGCAGGACTTCAGGGACTGCCATCCCTGCCCACAGATTACCCCGGGGCACTTCTGCCCCAACCTGGATACTCTCACGCAGGCCCGTCTTTGCACCCCTACCCCGGCCCACACACTGCCATGCTGCTTCATCCACCCCCTCATAGCCACCCCAGCGAAACCCTCATAGGACAAGGGCTTGACATACATGCCCACTGAGGGATGGAAGGGTACATTGTAATCGGACTTTGCAGTACCACAGCCCACTACCCTCAGCAAACCTTCAGGGCATCACCACAAAATGACTATGAGAATGTCTTAAATGCACTGACCTGGCATCATAAATGTATCGAAATGTTCATTTTATGCACTCAGCTCCCACGCGATGCCCATTCCAAATGCCTGACAGACTTGTTACATTCCTTATCAACATTTATTACTATCATCTCATTGCTCTTGATGCACTGTACTCAATTCAGTATTTACTAGTTGTAATGCACATTGCTGCATTTGATTGGATACACCCATGTCTTCCTATGGCCTTAAGGGCGATATGAAATCTCCCTTAATCTAACATTAAGGCCTTCATTGCCTTTCTTGCCTTGCCTCCGAAAACCCTTTTTGAGGAGCACAAACGGAAAACAGCATATACCTCCTCATTCAGGACTCAAATATATCAGAAAGTCCTGAAATTGTCTTCTGAGATAAACAACTGCACCAAATCCTGCTGAACATGGTTAATAAAGTGTAAAGGGTGGAGCTC
>TCONS_00017767
CGCGTCGCTTCATAGACATCAGTAGCGCGAAAAGGACCCGACATCATCCCAAACGCGCCGCTAATGCTGGATACTCGGCCCGGTTCACGCTTCTGCTGCTACGTTCTTATTAAGTTATTGTAGAGTATCTCCCGGTCTGACGTGTGTTGTCCTCCGTCAGTGAGTGTGTGAGCTCGGCTTCCGTATCGCATGGATAAGAGGTATGAGGAGTTGGTGCAGTACCCAGGCTCTGACGCCATGCCTGTGGGAGGCTACAGGGACACCATGAGGTCACTTCCTCCACCTCACTATGGCCACACTGTGCCTGACTCTCTGAAACACCACCGGGACCAGATCTATGGTCATCCTCTGTTTCCTCTCCTGGCTCTCGTATTTGAAAAGTGTGAACTTGCCACTTGCTCACCACGAGACTCCACCTCCATGTCAAACCCCGCCCACCTCCCTGGGATGACCAATCACAGTGATGTCTGCTCCTCTGACTCGTTCAACGATGATATTGCAGCCTTTGCCAAACAAATTCGATCAGAGAAACCCATATTTTCATCAAATCCAGAACTGGATAATCTGATGATCCAGGCCATTCAAGTTTTACGGTTTCATCTATTAGAACTAGAAAAGGGTAAGATGCCCACTGATTTGGTGCTGGAAGACCGAGAGGGTGGATCTAAATCTGACATGGAAGACTTCACTGGTTCTTGTACAAGTCTGTCAGAACAAAATCAGTCTTGGTTGCGAGACCCAGATGACTGTGTGTCAACCCCCTCAGGGACCCCCAGTGCCTCCTGTGGGCTCAACTCACACAGTGTGGAGAACTGCAGTGATG

Function

symbol description
meis3 Enables sequence-specific DNA binding activity. Involved in hindbrain development and positive regulation of transcription by RNA polymerase II. Acts upstream of or within autonomic nervous system development; exocrine pancreas development; and positive regulation of histone acetylation. Located in cytoplasm and nucleus. Is expressed in several structures, including fin bud; mesoderm; neural keel; neural plate; and posterior neural tube. Orthologous to human MEIS3 (Meis homeobox 3).

GO:

id name namespace
GO:0048484 enteric nervous system development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0031016 pancreas development biological_process
GO:0031017 exocrine pancreas development biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0035066 positive regulation of histone acetylation biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:1901166 neural crest cell migration involved in autonomic nervous system development biological_process
GO:0001654 eye development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0007420 brain development biological_process
GO:0030902 hindbrain development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0005515 protein binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-010406-2 Enables sequence-specific DNA binding activity. Involved in hindbrain development and positive regulation of transcription by RNA polymerase II. Acts upstream of or within autonomic nervous system development; exocrine pancreas development; and positive regulation of histone acetylation. Located in cytoplasm and nucleus. Is expressed in several structures, including fin bud; mesoderm; neural keel; neural plate; and posterior neural tube. Orthologous to human MEIS3 (Meis homeobox 3).

Ensembl:

ensembl_id ENSDARG00000002795

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017765 False 2373 mRNA 0.47 13 6838039 6863317
TCONS_00017766 False 2147 mRNA 0.49 13 6838264 6863317
TCONS_00017767 True 823 mRNA 0.51 8 6854681 6863150

Neighbor

gene id symbol gene type direction distance location
XLOC_009010 atm coding downstream 187046 6514964 ~ 6650993 (-)
XLOC_009009 dscamb coding downstream 433596 6138423 ~ 6404443 (-)
XLOC_009008 NA coding downstream 936057 5898410 ~ 5901982 (-)
XLOC_009007 brwd1 coding downstream 942915 5828994 ~ 5895124 (-)
XLOC_009006 rbp2a coding downstream 1023033 5803458 ~ 5815006 (-)
XLOC_009012 ech1 coding upstream 63670 6926987 ~ 6946286 (-)
XLOC_009013 mrps22 coding upstream 85327 6948644 ~ 6966245 (-)
XLOC_009014 NA coding upstream 105064 6968381 ~ 6976921 (-)
XLOC_009015 CR396585.2 coding upstream 145505 7008822 ~ 7008938 (-)
XLOC_009016 CR396585.1 coding upstream 168780 7032097 ~ 7034722 (-)
XLOC_008997 FO704791.1 non-coding downstream 1454859 5383062 ~ 5383180 (-)
XLOC_008973 CU467614.1 non-coding downstream 2472767 4365158 ~ 4365272 (-)
XLOC_008970 NA non-coding downstream 2663166 4163578 ~ 4174873 (-)
XLOC_008957 NA non-coding downstream 3077082 3754566 ~ 3760957 (-)
XLOC_009017 NA non-coding upstream 201151 7064468 ~ 7065313 (-)
XLOC_009023 NA non-coding upstream 1486712 8350029 ~ 8394601 (-)

Expression


Co-expression Network