XLOC_009014


Basic Information

Item Value
gene id XLOC_009014
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 6968381 ~ 6976921 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017775
gaAAACCTACAGGCCACCAGTCGTGCTACAGCTACAGACCAGTGGTTTAGCAGCAACAGCTTTCGAGCGACGGAAACATGCCGAAGCGTTGTGCTTATgtattgtgcaaatctgacaccagGTATCCTAAAAGATTGGAGGGCGAGGTGAAATTTTTTCCCTTCCCAAAACCTAAAACTCAAGGGGAGAAATGCCGGGCTTGGATCAGGCAGTGTGGGAGGCCGCATTCACAACTAAACGTCGACAGGATTAACAAAAACACCTACATATGCTCCAAGcaTTTTGTTAACGGGCGACCTACCCCCGAGTACCCCAATCCGATCGCAGCTCACCCGGAGTTAGATCTAAGAAGGGAACATCAAGGGGCTTGCTGGACATCTCCAATAAAAGAGTTGGGAGCCAGAACCCCAAACTCAGCAGGAAGCCAGCACCTCAAACTCTACAGTGAACACATTTTACAGTACATCACAACAGAGTGGCTCCAGCTATGaAGAACATGATATGGGTGACCATAAAGAGGATCTAAAACCCCTGAAGGAAGAATTAGCCTATCAGGAGCAGGACATCTTAAATCTGAAGATTGAAATCAAGACAGAGGACGACTAACTCTATCATCTTCAAAAGGAACTTCCGAATCCACGCTCCTGAGATGCTTTAAAAGCAAACTCGTGTGTACTTCTCCACAGGGTTTTCATATGAGCAGTTTAACAGCTTGTGTCATTTTTTTGTGTCATTGTATCAACATTCCAGCTGATTCAAGTGCACAACAAACATTCCTCTCTCATACAAATGTATCAATTATGACATCGAAATTTGTCGATCTGTGTCAGCACACTGATCAACTCCTGGGTGgactatatttatatatgacaGTTTTTGGCCACACAGGGATGTTATTTCTGAGAACATGCCTGCTAAATTTAAGGAAGAATTTCCAAATACATTTGCCATCATAGACTGCACTGAACTGAAGATTCAGAGATCAAACTCATTAGTGTTGCAGAGTCAGACTCACTCCACCTACAAGTCTTCTATCACACTTAAGTCCCTAGTGGCCTGTGATCCACGAGGCGCAGTCATTTATGTTTCTGCCCTTTTCACTGGAGTAATTTCTGACGAAAAGATTTTCAATGAGTGCAACATCCTTCACATTTTGAAGGAGAACATTAAATGTGGAGTACATCTCAATGTAGGAGATGGCTTAATGGTTGATAAAGGCTTTCTAATTGAGAAGGAAGTTGAGGATTGGTTTGCAACTTAACATTCCACCTTTTGCAAGAGCAAACAGACAGATGCCACATGCAGATGCCACATGCAGATGCTACATGCAGATGCTGAAATGACCAAAAGAATAGCAAAGCGCAGGGTTCGTGTTGAAAGAGCTATTGCACAGATAAAGAAGTTAAAAATTGTGTCATGTCAATCCTGATTTTCCAGCTTGTGAATGTGAACATAAATCAGGagcagcatggtggtgcagtgggcagcacaatcgtcttaacagcaagaaggtcgctgggtctgaCCCCCACTGGGtccgttggcgtttctgtgtttgaatgttctccatgtgttgccGTAagttggtgctccggtttcccccacatacccaaaaatgtggtataggtgaattgggtaaactgaaattggctgtagtgtatgtttcccagtgattggttgaagctggaagtgcatccgtaaaacatatgctggataagttggtggttcattccactgtggtgaacccagattatcaaaagaactaagctgaaaagaaaatgaataaatgaatgaacataagtCAAATGTGGTATGTAGCCAGCATGCTGTCTAACTTCCAGCCACATATAATCAAAGATTAAGGTTGTCTGTGTGCAAAAGAGATGAGGGGTCAAGCAACATCATGCTATCGTCCTGCACTGCCTCGTTGGGTGAATTTTATATAACGTGCACAATACATGCACTTTAATACTGCCTCATCTAATTCTTTTACTTGATGGCTCAAACCACTTTCTAGTGGGTGTCTCTCGCCTCCTACAGTTATGTCAGCGGGGTCTGTTTACCAAGTAGCTGATGGGTGCTTCTGTCTGCCTTTTTAGTAAAGCAATTTTCTCTTCTGTAACTGAGAAAGTcctgaaaaataaaacactatCAATACAAAGCTTTGGGTTTTATATGTTGAGATGTTTCTGTACTAACAAGCCTGCCTCTGTAATGTTATGATATGTATATTATAGTATTGCATCTTTTATTAGGCTCTaaattttattgacattattgtttattatttctaTTCTTAATGTGGTCTTaccaacattttaaacatgttcaTTGCTAATTGTAACTatcttattgtttttatttacatgtctctttggacaaaagcataaaaataataataattttaacgt
>TCONS_00017776
gaAAACCTACAGGCCACCAGTCGTGCTACAGCTACAGACCAGTGGTTTAGCAGCAACAGCTTTCGAGCGACGGAAACATGCCGAAGCGTTGTGCTTATgtattgtgcaaatctgacaccagGTATCCTAAAAGATTGGAGGGCGAGGTGAAATTTTTTCCCTTCCCAAAACCTAAAACTCAAGGGGAGAAATGCCGGGCTTGGATCAGGCAGTGTGGGAGGCCGCATTCACAACTAAACGTCGACAGGATTAACAAAAACACCTACATATGCTCCAAGcaTTTTGTTAACGGGCGACCTACCCCCGAGTACCCCAATCCGATCGCAGCTCACCCGGAGTTAGATCTAAGAAGGGAACATCAAGGGGCTTGCTGGACATCTCCAATAAAAGAGGAGCCAGAACCCCAAACTCAGCAGGAAGCCAGCACCTCAAACTCTACAGTGAACACATTTTACAGTACATCACAACAGAGTGGCTCCAGCTATGaAGAACATGATATGGGTGACCATAAAGAGGATCTAAAACCCCTGAAGGAAGAATTAGCCTATCAGGAGCAGGACATCTTAAATCTGAAGATTGAAATCAAGACAGAGGACGACTAACTCTATCATCTTCAAAAGGAACTTCCGAATCCACGCTCCTGAGATGCTTTAAAAGCAAACTCGTGTGTACTTCTCCACAGGGTTTTCATATGAGCAGTTTAACAGCTTGTGTCATTTTTTTGTGTCATTGTATCAACATTCCAGCTGATTCAAGTGCACAACAAACATTCCTCTCTCATACAAATGTATCAATTATGACATCGAAATTTGTCGATCTGTGTCAGCACACTGATCAACTCCTGGGTGgactatatttatatatgacaGTTTTTGGCCACACAGGGATGTTATTTCTGAGAACATGCCTGCTAAATTTAAGGAAGAATTTCCAAATACATTTGCCATCATAGACTGCACTGAACTGAAGATTCAGAGATCAAACTCATTAGTGTTGCAGAGTCAGACTCACTCCACCTACAAGTCTTCTATCACACTTAAGTCCCTAGTGGCCTGTGATCCACGAGGCGCAGTCATTTATGTTTCTGCCCTTTTCACTGGAGTAATTTCTGACGAAAAGATTTTCAATGAGTGCAACATCCTTCACATTTTGAAGGAGAACATTAAATGTGGAGTACATCTCAATGTAGGAGATGGCTTAATGGTTGATAAAGGCTTTCTAATTGAGAAGGAAGTTGAGGATTGGTTTGCAACTTAACATTCCACCTTTTGCAAGAGCAAACAGACAGATGCCACATGCAGATGCCACATGCAGATGCTACATGCAGATGCTGAAATGACCAAAAGAATAGCAAAGCGCAGGGTTCGTGTTGAAAGAGCTATTGCACAGATAAAGAAGTTAAAAATTGTGTCATGTCAATCCTGATTTTCCAGCTTGTGAATGTGAACATAAATCAGGagcagcatggtggtgcagtgggcagcacaatcgtcttaacagcaagaaggtcgctgggtctgaCCCCCACTGGGtccgttggcgtttctgtgtttgaatgttctccatgtgttgccGTAagttggtgctccggtttcccccacatacccaaaaatgtggtataggtgaattgggtaaactgaaattggctgtagtgtatgtttcccagtgattggttgaagctggaagtgcatccgtaaaacatatgctggataagttggtggttcattccactgtggtgaacccagattatcaaaagaactaagctgaaaagaaaatgaataaatgaatgaacataagtCAAATGTGGTATGTAGCCAGCATGCTGTCTAACTTCCAGCCACATATAATCAAAGATTAAGGTTGTCTGTGTGCAAAAGAGATGAGGGGTCAAGCAACATCATGCTATCGTCCTGCACTGCCTCGTTGGGTGAATTTTATATAACGTGCACAATACATGCACTTTAATACTGCCTCATCTAATTCTTTTACTTGATGGCTCAAACCACTTTCTAGTGGGTGTCTCTCGCCTCCTACAGTTATGTCAGCGGGGTCTGTTTACCAAGTAGCTGATGGGTGCTTCTGTCTGCCTTTTTAGTAAAGCAATTTTCTCTTCTGTAACTGAGAAAGTcctgaaaaataaaacactatCAATACAAA
>TCONS_00017777
CGGAAACATGCCGAAGCGTTGTGCTTATgtattgtgcaaatctgacaccagGTATCCTAAAAGATTGGAGGGCGAGGTGAAATTTTTTCCCTTCCCAAAACCTAAAACTCAAGGGGAGAAATGCCGGGCTTGGATCAGGCAGTGTGGGAGGCCGCATTCACAACTAAACGTCGACAGGATTAACAAAAACACCTACATATGCTCCAAGGGAGCCAGAACCCCAAACTCAGCAGGAAGCCAGCACCTCAAACTCTACAGTGAACACATTTTACAGTACATCACAACAGAGTGGCTCCAGCTATGaAGAACATGATATGGGTGACCATAAAGAGGATCTAAAACCCCTGAAGGAAGAATTAGCCTATCAGGAGCAGGACATCTTAAATCTGAAGATTGAAATCAAGACAGAGGACGACTAACTCTATCATCTTCAAAAGGAACTTCCGAATCCACGCTCCTGAGATGCTTTAAAAGCAAACTCGTGTGTACTTCTCCACAGGGTTTTCATATGAGCAGTTTAACAGCTTGTGTCATTTTTTTGTGTCATTGTATCAACATTCCAGCTGATTCAAGTGCACAACAAACATTCCTCTCTCATACAAATGTATCAATTATGACATCGAAATTTGTCGATCTGTGTCAGCACACTGATCAACTCCTGGGTGgactatatttatatatgacaGTTTTTGGCCACACAGGGATGTTATTTCTGAGAACATGCCTGCTAAATTTAAGGAAGAATTTCCAAATACATTTGCCATCATAGACTGCACTGAACTGAAGATTCAGAGATCAAACTCATTAGTGTTGCAGAGTCAGACTCACTC

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0009888 tissue development biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0060026 convergent extension biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-030131-1610 Predicted to enable DNA binding activity and metal ion binding activity.

Ensembl:

ensembl_id ENSDARG00000098999

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017775 False 2411 lncRNA 0.41 4 6968381 6976921
TCONS_00017776 False 2157 mRNA 0.43 4 6968631 6976921
TCONS_00017777 True 830 mRNA 0.42 3 6969775 6976851

Neighbor

gene id symbol gene type direction distance location
XLOC_009013 mrps22 coding downstream 2136 6948644 ~ 6966245 (-)
XLOC_009012 ech1 coding downstream 22095 6926987 ~ 6946286 (-)
XLOC_009011 meis3 coding downstream 105064 6838039 ~ 6863317 (-)
XLOC_009010 atm coding downstream 317388 6514964 ~ 6650993 (-)
XLOC_009009 dscamb coding downstream 563938 6138423 ~ 6404443 (-)
XLOC_009015 CR396585.2 coding upstream 31901 7008822 ~ 7008938 (-)
XLOC_009016 CR396585.1 coding upstream 55176 7032097 ~ 7034722 (-)
XLOC_009017 NA coding upstream 87547 7064468 ~ 7065313 (-)
XLOC_009018 SLC7A1 coding upstream 322835 7299756 ~ 7337537 (-)
XLOC_009019 gbe1b coding upstream 407599 7384520 ~ 7598542 (-)
XLOC_009008 NA non-coding downstream 1066399 5898410 ~ 5901982 (-)
XLOC_008997 FO704791.1 non-coding downstream 1585201 5383062 ~ 5383180 (-)
XLOC_008973 CU467614.1 non-coding downstream 2603109 4365158 ~ 4365272 (-)
XLOC_008970 NA non-coding downstream 2793508 4163578 ~ 4174873 (-)
XLOC_008957 NA non-coding downstream 3207424 3754566 ~ 3760957 (-)
XLOC_009023 NA non-coding upstream 1373108 8350029 ~ 8394601 (-)
XLOC_009025 NA non-coding upstream 1622670 8599591 ~ 8602094 (-)

Expression


Co-expression Network