CI01000034_04641898_04648112


Basic Information

Item Value
gene id CI01000034_04641898_04648112
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4641026 ~ 4648150 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_04641898_04648112.mRNA
GTATAAAGAGGACAGAAAAAGCAAAGTGGTCCAAATATATTAGTGGCCCTACTATATTTTAATACATATTCATTAAACAGTAGTCAAACAACACCTGGATGATTTACATCTCCGCAGATTCTAATATGTAAAACCAGCGGAAACTTTAATTCAATGAGCATCCAGGCTTTCTATTAAATATTCAGAGTTTTTGTTACTCAAAGAACAACACTGTCATGTCAAATGTAGTACATTTAAGAATGTACAGTATATTTATGTTACATTGGCAAAAAAAAAAAAATGAAAATGTTCTGCTCCACTTTATATATGAGAAATATTTTTGGGTGCATGTTTATGAAACATGAAAAAAAAAAAAAAAGGAGAAATCCGCACACCAGTTCAAGGTCCATTAAAAACTACTTCACTGTGACAACAAAATACCAAAGTACACTAACAAAAATGTAATTTTGCGCAAACCAAGTTGCTTCAGTATAACTTCCAAAATACAATGACAAATGACAAAAACAACATATAAAATTACATACATATCAATAACACCTCAAAATAGTATGAAGGAATTGTTCAAAACAGAAAGGACACTTTTGAGCAGTAACACCTGTCTGAAAAAAGCATACACTTAAAACTTAACACTTATTCAGATTCCTTTTAATCCTGTATGTCTGTCAAAACTGTATTTCTAAACTGAAAATCAAGTGGTAAACAGAGTGAACAAAAATCCATCAATGCATAAGTTTAAACTGGTGATGTTAATGATTGTAAACAATCACAATTGTTTGTTAATGGGAAGCCCAGGTGATGCAAATCTGTGCCAATGCTCATCTTTAAAATGCCTGGTTAGATTGGCAAACTGAATGGTTGAACCTGTGGTCAAAATGGTTTATTTACTTATTATTTTGTTGTATCTATATCATCCATATAGTGAAGTGTTCTGTTCCCCAATTGAACGTGACTTGCACATGTCTGACTGGAGCGATGCTGGGCATGTACTGCAAGAAAACAAAGGACAGCCTGAACATGATGACAACAAAGACCATTTTGAGAAGTCTAATTCTAAAATGGAGAAACCAAATTTTAGGTCATCTGAGGAGTCTACTTTTAAACCTGAGAATTTAAATGTTTTTGTGGAACCCAGTTTTTCCCTTCAATCTGAGAAGTTAAGTCCTCTATCCAGTTCTAAGTCAAGTTCTCCTTTCCCTGAGAAATCAAGCATTTACTTCTCAAAGACCAGTTCTAAACCTGAGAAACCTAGTGTTCCTATGGAACCCAGTTTTAAACCTGAGAAACCTAGTGCTCCCATGGAACCCAGTTTCTCTCCGTCTGAGAAGTTGATCTCTCATTCTTCTGAAAAACCAAGTTCTAAACTGGAGACCTCAATTTCCCTTCTCCCAGTAAAATCAAATGTTTTCATCTCAAAGCCCAGTTCTATTCCTGAGAAACCTAGTGCTCCCATGGAACCCAGTTCCTTCCTCCACACAGTGAAGTCTAGCACTCTTCCTTTTGACAATTCTAAACCTGAGAAACCTAGTGCTGCCATGGAACCTGGTTCCTCTCCATCTGTGAAGTCTAGCTCTTATCCTGAGAAACCCAGTTCTAAACCTGAGAAACCTAGTGCTCCCATGGAACCCAGTTCTAAGCCTGAGAAACCCAGTTCCTCTCCATCTGAGAAGTCTAGCTCTCATCCTTCTCAGAAGCCCAGCCCTAAACCTGAAAAACCCAGTGCTGCTATGAAACCCAGTTCTTCCCTCCCATCTGACAAATCTAGTTATCTAACCTCTAAGAAACTGACTCCTAAATTGGATATACCCAAGTCTATTGCCACAGTGAAATCCAGTGTTCTTGATAAACGCAACACTTCTGTGAATGCCAGTTCTTTCTTTCTCTCTGAGAAGTCTATGTCTCTTCCAAGACGTTTAGTGAACTTCAGTTGTAAACATAAACCCTCTGGCCTAATGGAATGCAACTCTTCCATCCTCTCTAAGAAGCCGAGCTTAAAACATGAGAAACCTAGTGCTTCTCCTGAGAAATCCTATCTTGAACCTGAGAAGTGGTCATCTGTGAAATCCAACTTTAAACCTGAGAAACCCTCTGGGAAACCTGCTTTTAGATCAAGGCCCTCTGAGGAGTTCAGTTCAAGAGTGCTTTACTACTGGAAGAATCCAATTCCCTTATCTCTAAGGTACATGGCGCACTCCTGCTTGAAGAAACCAAATCTCCTTGTGGTTCAAGACTATCTGCAAAATCCAGTACTCCCTGTTCACCCAAGTGATTTTGAAAGATCAAACCACTCATGTGTTGGTAATCAAATCTGACATTGATTATAGAAAATCTTTGAATGCCACCATGCCAA

Function

NR:

description
PREDICTED: proteoglycan 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_04641898_04648112.mRNA True 2347 mRNA 0.38 5 4641026 4648150

Neighbor

gene id symbol gene type direction distance location
CI01000034_04548660_04597274 GRIN2C coding upstream 43630 4548587 ~ 4597396 (+)
CI01000034_04525428_04534655 NA coding upstream 105342 4525001 ~ 4535684 (+)
CI01000034_04473631_04513799 RFX1, RFX1A coding upstream 126481 4473631 ~ 4514545 (+)
CI01000034_04364393_04367046 S1PR5, S1PR5A coding upstream 273822 4364314 ~ 4367204 (+)
CI01000034_04282490_04284734 NA coding upstream 355490 4282490 ~ 4285536 (+)
CI01000034_04728112_04738169 GAA coding downstream 78699 4726849 ~ 4738327 (+)
CI01000034_04746797_04771378 TBC1D16 coding downstream 98647 4746797 ~ 4771931 (+)
CI01000034_04811319_04813561 CBX4 coding downstream 163169 4811319 ~ 4814665 (+)
CI01000034_04818587_04820434 CBX8A coding downstream 168535 4816685 ~ 4821234 (+)
CI01000034_04831248_04857331 NA coding downstream 182955 4831048 ~ 4858068 (+)
G170579 NA non-coding upstream 18698 4621839 ~ 4622328 (+)
G170223 NA non-coding upstream 78179 4550495 ~ 4562847 (+)
G170178 NA non-coding upstream 194117 4443628 ~ 4446909 (+)
G170205 NA non-coding upstream 224175 4410355 ~ 4416851 (+)
G170232 NA non-coding upstream 231767 4405633 ~ 4409259 (+)
G170620 NA non-coding downstream 59513 4707663 ~ 4707873 (+)
G170644 NA non-coding downstream 124156 4772306 ~ 4773521 (+)
G170645 NA non-coding downstream 125510 4773660 ~ 4777068 (+)
G170680 NA non-coding downstream 146096 4794246 ~ 4794445 (+)
G170688 NA non-coding downstream 180480 4828630 ~ 4829489 (+)
CI01000034_04192675_04200041 NA other upstream 442825 4192311 ~ 4200636 (+)
CI01000034_04125435_04125780 RPRML other upstream 514215 4125100 ~ 4126825 (+)
CI01000034_03432846_03437608 NDUFA4, NDUFA4L other upstream 1189177 3432846 ~ 3438839 (+)
G169806 NA other upstream 2303336 2317973 ~ 2337690 (+)
CI01000034_01729413_01730790 EVE1 other upstream 2909849 1729413 ~ 1731179 (+)

Expression


Co-expression Network