XLOC_000902 (rpl24)


Basic Information

Item Value
gene id XLOC_000902
gene name rpl24
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 6408 ~ 12027 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001413
ATTCGGCATCTGCAGCACCGGATCCGCCATCCCCGCTCCGGTCGCCGCCATACTTCCCGCTTGTGTCACCGCCAGGCAACCGAGCGCAGATTTCATTGGATGATTTaatctgaaaatatttatatttttggatatttttacAGAATAGTAGGGTTCATTCCTATGTCAAATATATGTTtacttcaaaaaaatattttactttaacgAAACGGGCTCCTTTATAAACCGCTTACCCACAATTCCTCTTCCTCTTCCCCGTCTGAACCGCCGCCATGAAGGTCGAGCTGTGCAGTTTTAGCGGATACAAAATCTATCCCGGTCACGGCCGGCGATACGCCAGGATTGACGGAAAGGTTTTCCAGTTCCTCAATGCCAAATGTGAGTCTGCGTTTCTGTCCAAGAGGAACCCGAGGCAGATCAACTGGACCGTTCTGTACCGCCGCAAGCACAAGAAGGGCCAGTCTGAGGAGGTGTCGAAGAAGCGCACACGTCGTGCAGTAAAGTTCCAGCGGGCGATCACCGGCGCTTCTCTGGCCGAGATTCTGGCCAAGAGGAACCAGAAGCCTGAAGTGCGTAAAGCCCAGCGCGAGCAGGCCATcagGGCTGCAAAGGAGGCGAAGAAAGCCAAGCAGGCCACCAAGAAGCAGACGACCCAGAGCAGCAAGgcTCCTGCTAAATCAGCTCAGAAACAGAAGATTGCCAAGCCCATGAAGGTCAGCGCTCCTCGCGTCGGTGGCAAACGCTAAACTCTGATGTGCTAATAAAGATTCACTGCTAACCTtcagtgtgtgcgtgtttgtgtgtgtgtttagccgGATCAGTAATGCTGTGTGTTTATCAGAACACTGTTCCCTGTCCGCTTCAGTGGTCAGGGCCTGTGTGCGGCTGCAGCTGTGGATGTGGCTTACTCCgctgattgttgttgttgttgttgttgttgttgtttggaaGTGTTCGACTCTAACTGTAAACAGAGCGGCTGTTCTGAACCTGCTGCTGAGTTGATCAGGGTTTGGGC
>TCONS_00001414
cgagcacaagcaagaaaacgtgtgtattttaaacatggcgggctttttgttttcattctggcttgttgcgcaaGCGAATGAAGagtctctgtaaaccaatagcgttcagctgcgtgtTTAGcgccgccttttggtaccctttctcgtgtttaGTACTCTTTTGAAAGGGTGCAGAAGAAGTAGTACGGTACGGTAAGCCTTTTGACAGGAAAAAGTTTCTTTGAAACGGCCATAAacgcgtaccaaaccgaaccgtaccactcagtgaaaatgggccaatagatagatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcactaaTCACTTGCTACAGCTAACGCTGCTGTGCATCTGATCTTTAGGGCTGCAAAGGAGGCGAAGAAAGCCAAGCAGGCCACCAAGAAGCAGACGACCCAGAGCAGCAAGgcTCCTGCTAAATCAGCTCAGAAACAGAAGATTGCCAAGCCCATGAAGGTCAGCGCTCCTCGCGTCGGTGGCAAACGCTAAACTCTGATGTGCTAATAAAGATTCACTGCTAACCTtca
>TCONS_00001415
AGGAGAACATGAAGCCAGCATAGCAGATATCAGCATGATCAACCGCTGCTGTTCTCGTCTCCACTGAATCATGCAGAGAGTGTTTTACTGCGAGTGAAGGGCGACGTGTACTCCTGTGAGGAGGCTGAGGGCTGCAGACGTCATGTGCTGGAGATATGGAGCAGACCCCACTGCTCTAATGAAGTAcactgacctgtgtgtgtgtgtgtgtgttgtgctcttCAGGAGGAGGTGTCGAAGAAGCGCACACGTCGTGCAGTAAAGTTCCAGCGGGCGATCACCGGCGCTTCTCTGGCCGAGATTCTGGCCAAGAGGAACCAGAAGCCTGAAGTGCGTAAAGCCCAGCGCGAGCAGGCCATcagGGCTGCAAAGGAGGCGAAGAAAGCCAAGCAGGCCACCAAGAAGCAGACGACCCAGAGCAGCAAGgcTCCTGCTAAATCAGCTCAGAAACAGAAGATTGCCAAGCCCATGAAGGTCAGCGCTCCTCGCGTCGGTGGCAAACGCTAAACTCTGATGTGCTAATAAAGATTCACTGCTAACCTtca
>TCONS_00001416
AAACATCTGCAATATAACCTCACAGATGCGCCGATTAAAGTGTTTATGAGTTATTAATGTTCGCGGCGTGTCTGTAATGACGCTCATTTGTGCTCTGCAGGGTCGAGCTGTGCAGTTTTAGCGGATACAAAATCTATCCCGGTCACGGCCGGCGATACGCCAGGATTGACGGAAAGGTTTTCCAGTTCCTCAATGCCAAATGTGAGTCTGCGTTTCTGTCCAAGAGGAACCCGAGGCAGATCAACTGGACCGTTCTGTACCGCCGCAAGCACAAGAAGGGCCAGTCTGAGGAGGTGTCGAAGAAGCGCACACGTCGTGCAGTAAAGTTCCAGCGGGCGATCACCGGCGCTTCTCTGGCCGAGATTCTGGCCAAGAGGAACCAGAAGCCTGAAGTGCGTAAAGCCCAGCGCGAGCAGGCCATcagGGCTGCAAAGGAGGCGAAGAAAGCCAAGCAGGCCACCAAGAAGCAGACGACCCAGAGCAGCAAGgcTCCTGCTAAATCAGCTCAGAAACAGAAGATTGCCAAGCCCATGAAGGTCAGCGCTCCTCGCGTCGGTGGCAAACGCTAAACTCTGATGTGCTAATAAAGATTCACTGCTAACCTtca

Function

symbol description
rpl24 Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL24 (ribosomal protein L24).

GO:

id name namespace
GO:0000027 ribosomal large subunit assembly biological_process
GO:0043009 chordate embryonic development biological_process
GO:1902626 assembly of large subunit precursor of preribosome biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-020419-25 Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL24 (ribosomal protein L24).

Ensembl:

ensembl_id ENSDARG00000099104

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001413 False 1018 mRNA 0.51 6 6408 12027
TCONS_00001414 False 563 lncRNA 0.48 2 6642 7335
TCONS_00001415 False 545 lncRNA 0.54 3 6642 9919
TCONS_00001416 True 607 lncRNA 0.53 5 6642 11725

Neighbor

gene id symbol gene type direction distance location
XLOC_000903 tmem39a coding upstream 27286 39313 ~ 44565 (-)
XLOC_000904 ildr1a coding upstream 32812 44839 ~ 50247 (-)
XLOC_000905 si:zfos-1011f11.2 coding upstream 48952 60979 ~ 65017 (-)
XLOC_000906 gpa33a coding upstream 53678 65705 ~ 71523 (-)
XLOC_000907 FP067451.1 coding upstream 96258 108285 ~ 147846 (-)
XLOC_000908 NA non-coding upstream 129262 141289 ~ 142119 (-)
XLOC_000927 NA non-coding upstream 766548 778575 ~ 779614 (-)
XLOC_000929 NA non-coding upstream 993910 1005937 ~ 1014866 (-)
XLOC_000930 CU611053.1 non-coding upstream 1038914 1050941 ~ 1051057 (-)

Expression


Co-expression Network