G169181


Basic Information

Item Value
gene id G169181
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 626550 ~ 630549 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU192198
TGGTTTTCCCCCCACATTGGATTCAACAAATCACAGTCCAGCAGTTTAGTTCAGTTCTCAGACAACTTGTTTATGGCAATGGCCACTTTATGACATTTCTCTGTGTATTTACAAGACATTAACTTCCTTGAATTTACTTTGAAAACTTTAACAGTAGACAGCCATTGAAATACAATGTTTGAGCTGAACACAAACCAAACAAGCAACTACAAACAAAAAACTTTATTTAACTCCAGGTTTGGAAGAACTTTTGCTGCAATTTGTAGTTCAATGATTAGATAAAGCTGACCAACACTACTTGGTTTCTTAATTAACAGAAAGTTCACTTCAGTTTCAGTAATCAAGTATAATATACCAGTGTCAACATTATCAAAATGATATACACACATGCATACAGAAGTCACCTGACAAAAGAAAACTCAAATACAAAAGTTACAAAACTAGAAATCTACCAGCAATTTAATCCATCTTTATTAAATTTACTCAAATTATTAATAGCTAAAGTATAAAAATAAAACTGCATAGTTTGTCTTCATCTATTGAAATTTAGTGCAAAATAAAAACACAATAAGGCTTCAAGGGGAAGTGGAGAGACCCTAACTAAAGTTTCAATCTTGAAAAAGTATCCTATCACTTCAAGCATTTGTTAATGTCCTCATGTCGATGTTGCATATTTCAAATAGCAATGAATTTAATAACTTCAAACAAAACAGTAGTTTCAGTATAGATAGTGGTCCATTAGATCCAGTACAATGCCATAATATCATTCACTCTCTGTTCACTTGGCAGGAGCAAAGCCCACGCGGTCCGCCTCCCTGTCAAACACAGTGTAGTAGCGGCCGATAAACATGTCTCCCAGAATCCACAGCGGCCCGGCGGGAGGTGGGATATCCATGGCCATAAAGCCAGACAGACAAACACTCATACCCAAATGAGTCACCTGCAGAACATAGTCCTTTCCAGTTAAGTTGAACATCTTCCCTCCCATGCTCAAGGAAACAACAGGAAGTGATGGAATCTTTTTACAGTCAATCCAGTACTCTCCCATAAGCAGTGGTATGGCTCCGATAGCTTTCTGCAGGGCCCGCACCTCTTGAACCGGCCCTACAATCATTGACGTTCCTGTGTCAACAATTGCCTGGCATCCACTTTTGCAGAGGGTAAGAGTGCCACCCACCTGAACCTCATCCATCTTTATCTGCCAGTAGGCTTTTCGCGTGACATTAACGTAATGCAGATCACCATCGAAATACTGCTTGTCAAAACCTCCCAGCATCAGCTCACCTCCAACCTCACCGGCAGGGTCCCGGTTAATATAGAAAGAGAAGATATTCTGGGGCAGGATTTTGGCAGCCATGGCCGTGTCAAACACTGGCGTAATCCCATCTACAGAAATGGCGGGGTATGCCATTCCCAAGACGCCATCAAAACGTGCCACCGCGAACACAATCCCAGGCTGTTTAACCGCCTCTGCAAACTGCTGGTTTGGCACCTTCAGCCCTGCCAACTACAGACAGGAAAAAAAAAAAATAAAAAAAAATAAAAATATTCACTGATGGTCAAAAGTTTTAAAATGTAATTTACTCCTGTGATGTCAAGTCTTCAGTGTCACATGATCCTTCAAAAATTATTCTAATATCCTGAATTGATGCTCAAGAAACATTTCTGATTATTATCAATGTTGAAAACAGTTGTGCTGCACCAATAATAGTCAGGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU192198 True 1718 lncRNA 0.40 5 626550 630549

Neighbor

gene id symbol gene type direction distance location
CI01000034_00615867_00624387 MIEF1 coding upstream 1232 614958 ~ 625820 (+)
CI01000034_00545816_00547683 NA coding upstream 78036 545816 ~ 548514 (+)
CI01000034_00520790_00525323 DDX5 coding upstream 100977 520672 ~ 525573 (+)
CI01000034_00486238_00516732 SMURF2 coding upstream 109026 486238 ~ 517524 (+)
CI01000034_00455762_00459788 KPNA2, IMA2 coding upstream 166623 455145 ~ 459927 (+)
CI01000034_00637189_00642362 NA coding downstream 6421 636970 ~ 642439 (+)
CI01000034_00643011_00645310 RBX1 coding downstream 12352 642901 ~ 645310 (+)
CI01000034_00661553_00677752 XPP3, XPNPEP3 coding downstream 31004 661553 ~ 679148 (+)
CI01000034_00683973_00725610 EP300, EP300B coding downstream 53424 683973 ~ 725905 (+)
CI01000034_00735558_00738466 DESI1A, DESI1 coding downstream 104938 735487 ~ 739475 (+)
G169215 NA non-coding upstream 13311 612436 ~ 613239 (+)
G169221 NA non-coding upstream 36351 589854 ~ 590199 (+)
G169220 NA non-coding upstream 38406 587903 ~ 588144 (+)
G169174 NA non-coding upstream 67309 557107 ~ 559241 (+)
G169173 NA non-coding upstream 69591 556728 ~ 556959 (+)
G169205 NA non-coding downstream 102066 732615 ~ 733448 (+)
G169203 NA non-coding downstream 103206 733755 ~ 734093 (+)
G169245 NA non-coding downstream 133337 763886 ~ 764116 (+)
G169309 NA other downstream 338712 969261 ~ 969921 (+)
G169357 NA other downstream 472991 1053543 ~ 1119019 (+)
G169394 NA other downstream 519748 1150297 ~ 1193560 (+)
G169340 NA other downstream 619670 1250219 ~ 1310878 (+)

Expression


Co-expression Network