G169262


Basic Information

Item Value
gene id G169262
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 893619 ~ 910887 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU192283
ATTTTATGTATTCAAATTAAGATATGGCACCTGTTTTGGTGTTGTTTCATTGGCTGGTATCTCAGGTGGAGAAGGTATGTGGGCGTGGCCAAGGGGAGAGTCCTGACAGAGTATCTGCTCTGGTGAGAAAGCATCACTGCTTTCCTCATCAAACGAAGAGTTCTCTGCTTCTACTTTTGGAAACTCCTACCTATGATGACTTGTTTGAGGCTGCTGTGAACTGGAAGGATATTTTTGTGAATGAGCTCCATCGGACCAGGCCGCTGGGAGATTTTATCGTTCAGGTCGTCAGCTAGACGAGCTCGTTTCAGCAGAAGCTGTCTGGCCTGAAGAGATGGCTCCGCTGACGTCTCTTCAAGAATGTGCATCCTGACCAGCTCTGACCTCTCTGGGCGACTGCGGATCTTTCTCTTCAGGTAGTCCTCAGTCCTAGCTCGTTCTAAACTTCGTCTCTGCTCATGAAAGGACGCAGAACTTTTCAGTGGTGGCATGATCCCCTGGCTAACCAGTTCTTCTCGAGTCCGTCTCTGCTGAAGTTTAAGTTGGAGCACCGACGAGTAGCTCGATCTGTCTCCTTCATCCTCCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU192283 True 586 lncRNA 0.49 6 893619 910887

Neighbor

gene id symbol gene type direction distance location
CI01000034_00860887_00862727 NA coding upstream 30718 860887 ~ 862901 (+)
CI01000034_00821815_00825192 NA coding upstream 68414 820595 ~ 825205 (+)
CI01000034_00785411_00801907 NA coding upstream 91560 784545 ~ 803844 (+)
CI01000034_00735558_00738466 DESI1A, DESI1 coding upstream 154144 735487 ~ 739475 (+)
CI01000034_00683973_00725610 EP300, EP300B coding upstream 167714 683973 ~ 725905 (+)
CI01000034_00943362_00945523 NA coding downstream 32475 943362 ~ 945631 (+)
CI01000034_00951238_00955839 NA coding downstream 39580 950467 ~ 956087 (+)
CI01000034_01124686_01125224 NA coding downstream 213799 1124686 ~ 1126197 (+)
CI01000034_01139725_01146104 BAIAP2L2A coding downstream 228838 1139725 ~ 1146324 (+)
CI01000034_01210160_01223724 NA coding downstream 299273 1210160 ~ 1223869 (+)
G169260 NA non-coding upstream 16566 876810 ~ 877053 (+)
G169259 NA non-coding upstream 18208 874777 ~ 875411 (+)
G169210 NA non-coding upstream 21219 872002 ~ 872400 (+)
G169254 NA non-coding upstream 76989 804693 ~ 816630 (+)
G169275 NA non-coding downstream 1114 912001 ~ 912287 (+)
G169308 NA non-coding downstream 54966 965853 ~ 966104 (+)
G169312 NA non-coding downstream 68624 979511 ~ 982209 (+)
G169302 NA non-coding downstream 82273 993160 ~ 1021824 (+)
G169357 NA non-coding downstream 142656 1053543 ~ 1119019 (+)
CI01000034_00643011_00645310 RBX1 other upstream 247209 642901 ~ 645310 (+)
G169309 NA other downstream 58374 969261 ~ 969921 (+)
G169394 NA other downstream 239410 1150297 ~ 1193560 (+)
G169340 NA other downstream 339332 1250219 ~ 1310878 (+)
CI01000034_01729413_01730790 EVE1 other downstream 815623 1729413 ~ 1731179 (+)

Expression


Co-expression Network