Gene
RNA
| Item | Value |
|---|---|
| gene id | G169435 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000034 |
| NCBI id | null |
| chromosome length | 5914002 |
| location | 1294169 ~ 1302067 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU192498 | False | 978 | lncRNA | 0.51 | 7 | 1294169 | 1302067 |
| TU192499 | True | 354 | lncRNA | 0.47 | 2 | 1294169 | 1294624 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000034_01210160_01223724 | NA | coding | upstream | 70300 | 1210160 ~ 1223869 (+) |
| CI01000034_01139725_01146104 | BAIAP2L2A | coding | upstream | 147845 | 1139725 ~ 1146324 (+) |
| CI01000034_01124686_01125224 | NA | coding | upstream | 167972 | 1124686 ~ 1126197 (+) |
| CI01000034_00951238_00955839 | NA | coding | upstream | 338082 | 950467 ~ 956087 (+) |
| CI01000034_00943362_00945523 | NA | coding | upstream | 348538 | 943362 ~ 945631 (+) |
| CI01000034_01305634_01306636 | NA | coding | downstream | 3567 | 1305634 ~ 1306844 (+) |
| CI01000034_01383935_01395565 | NA | coding | downstream | 81524 | 1383591 ~ 1396448 (+) |
| CI01000034_01632580_01633233 | NA | coding | downstream | 329935 | 1632002 ~ 1633525 (+) |
| CI01000034_01637348_01637904 | NA | coding | downstream | 334544 | 1636611 ~ 1638009 (+) |
| CI01000034_01657515_01658817 | NA | coding | downstream | 355143 | 1657210 ~ 1659106 (+) |
| G169422 | NA | non-coding | upstream | 45797 | 1248147 ~ 1248372 (+) |
| G169417 | NA | non-coding | upstream | 61080 | 1232887 ~ 1233089 (+) |
| G169391 | NA | non-coding | upstream | 161701 | 1127749 ~ 1132468 (+) |
| G169392 | NA | non-coding | upstream | 166525 | 1126456 ~ 1127644 (+) |
| G169456 | NA | non-coding | downstream | 51091 | 1353158 ~ 1353446 (+) |
| G169458 | NA | non-coding | downstream | 54926 | 1356993 ~ 1357240 (+) |
| G169460 | NA | non-coding | downstream | 63138 | 1365205 ~ 1365584 (+) |
| G169461 | NA | non-coding | downstream | 67069 | 1369136 ~ 1369364 (+) |
| G169394 | NA | other | upstream | 100609 | 1150297 ~ 1193560 (+) |
| G169357 | NA | other | upstream | 175150 | 1053543 ~ 1119019 (+) |
| G169309 | NA | other | upstream | 324248 | 969261 ~ 969921 (+) |
| CI01000034_00643011_00645310 | RBX1 | other | upstream | 647759 | 642901 ~ 645310 (+) |
| CI01000034_01729413_01730790 | EVE1 | other | downstream | 424443 | 1729413 ~ 1731179 (+) |
| G169806 | NA | other | downstream | 1015906 | 2317973 ~ 2337690 (+) |
| CI01000034_03432846_03437608 | NDUFA4, NDUFA4L | other | downstream | 2132069 | 3432846 ~ 3438839 (+) |
| CI01000034_04125435_04125780 | RPRML | other | downstream | 2823033 | 4125100 ~ 4126825 (+) |
| CI01000034_04192675_04200041 | NA | other | downstream | 2892571 | 4192311 ~ 4200636 (+) |
