XLOC_000903 (tmem39a)


Basic Information

Item Value
gene id XLOC_000903
gene name tmem39a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 39313 ~ 44565 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001417
GTTCTGAGGCcgtaaacaacaaacaaacaaccgaGTAAACAAACAACGAGCTCCGGCGCAGACCCGCGGGCAGAGTGAGGAGCTCCGCCGCGCAGCAGATGCAGAGAGCGGCGTGTGGAGGAGCTGATGCCCGCTGATGCTGCTCCATGATCGtgtCCGCGGCGTGAGGTCGAGGGCTCCGAGATGCCCGGGGGCCGCAGGGGCCCCAGTAGACAGCAGCTGAGCCGCTCCGCGCTGCCGTCGCTGCAGACACTGGTGGGCGGCGGCCTGAGCAATGGGGCGGGGCTTCGATGCAGgagCAGCAGTGCGGTGGGTCTGTCAGCTCCGCCCCTCACCGCCCTCATCACCCCTGAGCCGGTCCGTCACTCCCGCATCCCGGATCTCCCTCTGGACAGTAACCTGCTGTTCGAGACGCTGCTGCTCCTCTACCTGCTGGTGGCGCTGTTGGTCCAGTACATCAACATCTACAGGACGGTGTGGTGGTCCTCCTACAGCCAGCCCACCGCCTCCACGTCactgAACTTCCACCTGATGGACGCTCACCTGGCCGTGTTCATCGCAAGGCTGGAGCCCGGATCCTGCAGCAACACCCCGCAGCACAcctggtCCGACAGCACCATCTGGCCGCAGGGAGTTCTGGTCCGCCACAGCCGCTGCCTGTATAAAGCCGTCGGCCCGTATAACGTGGCTCTGCCCTCCGACGTCTCGCACGCACGCTTCTACttccTCTTCCACAAGCCACTGCGGCTGCTGAATGTGCTGATCGGGATCGAGTGCAGTGTGGTTGTGTATCAGCTGTACTCTCTGCTGCGCTCTGAGCGCTGGAATCACACGCTCTCGCTCGGCCTGATCCTCGTCTGCAATTATTACGTGCTCTTCAAGCTGCTGCGCGACCGGCTGGTGCTGGGCAAGGCGTACTCGCACCCGCTGGGCAGCGCCGGCCTGGGCATGAAGAGAGACTGACCCCCCCGCCGCCGCCGCTCCGTCTGTGTAGGGGACGCTTCCTCTGCGCCGCTACACCACCGCTCACCCAGAGCCAGCCAAAGACtgaatctgaccaatcacagagcagcGCTGGGCAGGGGGGCGGTCCGGCTCGCTCTGCCGCCTCTCCTGAGTGTTCCTCCAGCGTCCGCCTGCAGATTCAGACCGGCCGGACATCTCGCTCCCTACTCTGTGCCAAACCCCAGGGGCGTGGCCTCGTGTAAGGGTGGGGCTCTTTGGACTCTGGGCGGAGCCTGTGACGGTCCAGCTTACAGTATTTTACTAAACGTCTGCATTTCACACAACCaaagggaggaggaggaggagtgatGAAGCAGACCTGcggatcatcacacacacacacacacacacacacacacacacacactgccttgATGCGCAGGCTCCGCCCCCTGCGCTGTGTGTTTTATACAGGACTGATTGTGCttaattattaaaactctttttttatgcTTTTCTGGGTCAAA
>TCONS_00001418
GATGGCGTCATGACGCAGCGTCGGTTTGCCACGTCGGTCTGTAACTGCGGCGCGAGGAACTTCAGCAACTTTGTGTTTTGCGTTCTGAGGCcgtaaacaacaaacaaacaaccgaGTAAACAAACAACGAGCTCCGGCGCAGACCCGCGGGCAGAGTGAGGAGCTCCGCCGCGCAGCAGATGCAGAGAGCGGCGTGTGGAGGAGCTGATGCCCGCTGATGCTGCTCCATGATCGtgtCCGCGGCGTGAGGTCGAGGGCTCCGAGATGCCCGGGGGCCGCAGGGGCCCCAGTAGACAGCAGCTGAGCCGCTCCGCGCTGCCGTCGCTGCAGACACTGGTGGGCGGCGGCCTGAGCAATGGGGCGGGGCTTCGATGCAGgagCAGCAGTGCGGTGGGTCTGTCAGCTCCGCCCCTCACCGCCCTCATCACCCCTGAGCCGGTCCGTCACTCCCGCATCCCGGATCTCCCTCTGGACAGTAACCTGCTGTTCGAGACGCTGCTGCTCCTCTACCTGCTGGTGGCGCTGTTGGTCCAGTACATCAACATCTACAGGACGGTGTGGTGGTCCTCCTACAGCCAGCCCACCGCCTCCACGTCactgAACTTCCACCTGATGGACGCTCACCTGGCCGTGTTCATCGCAGTGATGCTGTCCCGCAGGCTGGTGTGGACGCTGCTgtcggagGTGTGTGTGGCGTGTCCCGCGTCTCCGCTGTGCTACGTGCTCCTGCTGgcggtgcgtgtgtgtgtgttgacgcTGTGCGGCTGGGTTCTGTGCTGGACGCTGCTCAACCTCTTCCGGAGCCACTCGGTGCTGAAGCTGCTGTTCCTGGGATACCCgttcgGTGTGTACGTGCCGCTGTGCTGCCTCCATCAGGACGGCTCTCCCGCTGCCGACTGCGGTTTTGCGGATGCGGACGGGGCCGACGGGGCGCTGCTGCGGCCGAGAGACTTCCTGACGCTGCTGCGGGAGAACCTGCGCCAGCAGCTGagcggcacacacacacacacgcacacacacacctgcccgCCCTCACCTGAGCTCATCCGCAGTGAAGTGCAGCAGCTCAAGACCGACTTCAACCGCCGCATCAAGGAGGTGCTGTTCAACTCACTGCTCAGCGCGTACTACGTGGCCTTCCTGCCGCTCTGCTTCGTcaagagCACTCAGTACTATGACATGCGCTGGTCCTGTGAGCACCTGATCATGGTGTGGATCAACGCGTTCGTGATGCTGATGAGTCACCTGCTGCCGCCGCATTACTGTGACCTGCTGCACCGCTGCGCCGCTCACCTGGGGAGATGGCAGAGGCTGGAGCCCGGATCCTGCAGCAACACCCCGCAGCACAcctggtCCGACAGCACCATCTGGCCGCAGGGAGTTCTGGTCCGCCACAGCCGCTGCCTGTATAAAGCCGTCGGCCCGTATAACGTGGCTCTGCCCTCCGACGTCTCGCACGCACGCTTCTACttccTCTTCCACAAGCCACTGCGGCTGCTGAATGTGCTGATCGGGATCGAGTGCAGTGTGGTTGTGTATCAGCTGTACTCTCTGCTGCGCTCTGAGCGCTGGAATCACACGCTCTCGCTCGGCCTGATCCTCGTCTGCAATTATTACGTGCTCTTCAAGCTGCTGCGCGACCGGCTGGTGCTGGGCAAGGCGTACTCGCACCCGCTGGGCAGCGCCGGCCTGGGCATGAAGAGAGACTGACCCCCCCGCCGCCGCCGCTCCGTCTGTGTAGGGGACGCTTCCTCTGCGCCGCTACACCACCGCTCACCCAGAGCCAGCCAAAGACtgaatctgaccaatcacagagcagcGCTGGGCAGGGGGGCGGTCCGGCTCGCTCTGCCGCCTCTCCTGAGTGTTCCTCCAGCGTCCGCCTGCAGATTCAGACCGGCCGGACATCTCGCTCCCTACTCTGTGCCAAACCCCAGGGGCGTGGCCTCGTGTAAGGGTGGGGCTCTTTGGACTCTGGGCGGAGCCTGTGACGGTCCAGCTTACAGTATTTTACTAAACGTCTGCATTTCACACAACCaaagggaggaggaggaggagtgatGAAGCAGACCTGcggatcatcacacacacacacacacacacacacacacacacacactgccttgATGCGCAGGCTCCGCCCCCTGCGCTGTGTGTTTTATACAGGACTGATTGTGCttaattattaaaactctttttttatgcTT
>TCONS_00001419
CGTCGGTCTGTAACTGCGGCGCGAGGAACTTCAGCAACTTTGTGTTTTGCGTTCTGAGGCcgtaaacaacaaacaaacaaccgaGTAAACAAACAACGAGCTCCGGCGCAGACCCGCGGGCAGAGTGAGGAGCTCCGCCGCGCAGCAGATGCAGAGAGCGGCGTGTGGAGGAGCTGATGCCCGCTGATGCTGCTCCATGATCGgagCAGCAGTGCGGTGGGTCTGTCAGCTCCGCCCCTCACCGCCCTCATCACCCCTGAGCCGGTCCGTCACTCCCGCATCCCGGATCTCCCTCTGGACAGTAACCTGCTGTTCGAGACGCTGCTGCTCCTCTACCTGCTGGTGGCGCTGTTGGTCCAGTACATCAACATCTACAGGACGGTGTGGTGGTCCTCCTACAGCCAGCCCACCGCCTCCACGTCactgAACTTCCACCTGATGGACGCTCACCTGGCCGTGTTCATCGCAGTGATGCTGTCCCGCAGGCTGGTGTGGACGCTGCTgtcggagGTGTGTGTGGCGTGTCCCGCGTCTCCGCTGTGCTACGTGCTCCTGCTGgcggtgcgtgtgtgtgtgttgacgcTGTGCGGCTGGGTTCTGTGCTGGACGCTGCTCAACCTCTTCCGGAGCCACTCGGTGCTGAAGCTGCTGTTCCTGGGATACCCgttcgGTGTGTACGTGCCGCTGTGCTGCCTCCATCAGGACGGCTCTCCCGCTGCCGACTGCGGTTTTGCGGATGCGGACGGGGCCGACGGGGCGCTGCTGCGGCCGAGAGACTTCCTGACGCTGCTGCGGGAGAACCTGCGCCAGCAGCTGagcggcacacacacacacacgcacacacacacctgcccgCCCTCACCTGAGCTCATCCGCAGTGAAGTGCAGCAGCTCAAGACCGACTT
>TCONS_00001420
atAAACACACTCTGCTGAACTGCTGCTCGCTGTCGGAGCGACTCACTTTGACTATCAGACACAGATCTGCTGTTTCCTGCTCCGCCACTGAGAGAagcgctgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgcgcaggagCAGCAGTGCGGTGGGTCTGTCAGCTCCGCCCCTCACCGCCCTCATCACCCCTGAGCCGGTCCGTCACTCCCGCATCCCGGATCTCCCTCTGGACAGTAACCTGCTGTTCGAGACGCTGCTGCTCCTCTACCTGCTGGTGGCGCTGTTGGTCCAGTACATCAACATCTACAGGACGGTGTGGTGGTCCTCCTACAGCCAGCCCACCGCCTCCACGTCactgAACTTCCACCTGATGGACGCTCACCTGGCCGTGTTCATCGCAGTGATGCTGTCCCGCAGGCTGGTGTGGACGCTGCTgtcggagGTGTGTGTGGCGTGTCCCGCGTCTCCGCTGTGCTACGTGCTCCTGCTGg
>TCONS_00003283
GTCGGTTTGCCACGTCGGTCTGTAACTGCGGCGCGAGGAACTTCAGCAACTTTGTGTTTTGCGTTCTGAGGCcgtaaacaacaaacaaacaaccgaGTAAACAAACAACGAGCTCCGGCGCAGACCCGCGGGCAGAGTGAGGAGCTCCGCCGCGCAGCAGATGCAGAGAGCGGCGTGTGGAGGAGCTGATGCCCGCTGATGCTGCTCCATGATCGtgtCCGCGGCGTGAGGTCGAGGGCTCCGAGATGCCCGGGGGCCGCAGGGGCCCCAGTAGACAGCAGCTGAGCCGCTCCGCGCTGCCGTCGCTGCAGACACTGGTGGGCGGCGGCCTGAGCAATGGGGCGGGGCTTCGATGCAGGTGAGCATcacttaagccgcctttccactgcacacgacatctGGACTCGACTGTCAGAACTCGCCCGCTTGTGGCGGTCGCTCAGTATTTCAGTGCTGCCGTGCTGCATGGCAGAGGAGCTGATCTCACCGTCACCCAGTGCTGGAGCAGGAGCGTCACTCTCCCCGAGCCCAGCACGGcgcaatgaacacacacacacacacacacacacacacacacacacagacctgctTAGACAACACTGAGTACATCACATCCGGCCAGTCACAGCGGTCCAAACTCTTCAACAGATCCGCAGCTCAAACCAGATCAGAACACCACACAGCTCCCGGACCGCTCTCCACTCATAATGAAGAACTTCCGGCCTGACACatgtcgtgtgcagtgaaaacaaggcctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgacaatAAACACACTCTGCTGAACTGCTGCTCGCTGTCGGAGCGACTCACTTTGACTATCAGACACAGATCTGCTGTTTCCTGCTCCGCCACTGAGAGAagcgctgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgcgcaggagCAGCAGTGCGGTGGGTCTGTCAGCTCCGCCCCTCACCGCCCTCATCACCCCTGAGCCGGTCCGTCACTCCCGCATCCCGGATCTCCCTCTGGACAGTAACCTGCTGTTCGAGACGCTGCTGCTCCTCTACCTGCTGGTGGCGCTGTTGGTCCAGTACATCAACATCTACAGGACGGTGTGGTGGTCCTCCTACAGCCAGCCCACCGCCTCCACGTCactgAACTTCCACCTGATGGACGCTCACCTGGCCGTGTTCATCGCAGTGATGCTGTCCCGCAGGCTGGTGTGGACGCTGCTgtcggagGTGTGTGTGGCGTGTCCCGCGTCTCCGCTGTGCTACGTGCTCCTGCTGg
>TCONS_00001421
GTCGGTTTGCCACGTCGGTCTGTAACTGCGGCGCGAGGAACTTCAGCAACTTTGTGTTTTGCGTTCTGAGGCcgtaaacaacaaacaaacaaccgaGTAAACAAACAACGAGCTCCGGCGCAGACCCGCGGGCAGAGTGAGGAGCTCCGCCGCGCAGCAGATGCAGAGAGCGGCGTGTGGAGGAGCTGATGCCCGCTGATGCTGCTCCATGATCGtgtCCGCGGCGTGAGGTCGAGGGCTCCGAGATGCCCGGGGGCCGCAGGGGCCCCAGTAGACAGCAGCTGAGCCGCTCCGCGCTGCCGTCGCTGCAGACACTGGTGGGCGGCGGCCTGAGCAATGGGGCGGGGCTTCGATGCAGAACTTCCACCTGATGGACGCTCACCTGGCCGTGTTCATCGCAGTGATGCTGTC
>TCONS_00001422
acaccacacacatacacacacacacacatacacacacacacacatacacacacacacacacacacacacacacacgcgagtAGATTTCGTCCGTTATTGAGTGAGCAGCGCGGTGTTGTTTCCTGTTTGTGTGTGAACAGCGCGCTGCTGCTGCAGtgtCCGCGGCGTGAGGTCGAGGGCTCCGAGATGCCCGGGGGCCGCAGGGGCCCCAGTAGACAGCAGCTGAGCCGCTCCGCGCTGCCGTCGCTGCAGACACTGGTGGGCGGCGGCCTGAGCAATGGGGCGGGGCTTCGATGCAGgagCAGCAGTGCGGTGGGTCTGTCAGCTCCGCCCCTCACCGCCCTCATCACCCCTGAGCCGGTCCGTCACTCCCGCATCCCGGATCTCCCTCTGGACAGTAACCTGCTGTTCGAGACGCTGCTGCTCCTCTACCTGCTGGTGGCGCTGTTGGTCCAGTACATCAACATCTACAGGACGGTGTGGTGGTCCTCCTACAGCCAGCCCACCGCCTCCACGTCact
>TCONS_00001423
GTCGGTTTGCCACGTCGGTCTGTAACTGCGGCGCGAGGAACTTCAGCAACTTTGTGTTTTGCGTTCTGAGGCcgtaaacaacaaacaaacaaccgaGTAAACAAACAACGAGCTCCGGCGCAGACCCGCGGGCAGAGTGAGGAGCTCCGCCGCGCAGCAGATGCAGAGAGCGGCGTGTGGAGGAGCTGATGCCCGCTGATGCTGCTCCATGATCGtgtCCGCGGCGTGAGGTCGAGGGCTCCGAGATGCCCGGGGGCCGCAGGGGCCCCAGTAGACAGCAGCTGAGCCGCTCCGCGCTGCCGTCGCTGCAGACACTGGTGGGCGGCGGCCTGAGCAATGGGGCGGGGCTTCGATGCAGGTGAGCATcacttaagccgcctttccactgcacacgacatctGGACTCGACTGTCAGAACTCGCCCGCTTGTGGCGGTCGCTCAGTATTTCAGTGCTGCCGTGCTGCATGGCAGAGGAGCTGATCTCACCGTCACCCAGTGCTGGAGCAGGAGCGTCACTCTCCCCGAGCCCAGCACGGcgcaatgaacacacacacacacacacacacacacacacacacacagacctgctTAGACAACACTGAGTACATCACATCCGGCCAGTCACAGCGGTCCAAACTCTTCAACAGATCCGCAGCTCAAACCAGATCAGAACACCACACAGCTCCCGGACCGCTCTCCACTCATAATGAAGAACTTCCGGCCTGACACatgtcgtgtgcagtgaaaacaaggcctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgaca
>TCONS_00001424
CAGGTAAGCAGCAGTGAggctgtagagtgtgtgtgtgtgtgtgtgtgtgtgttagcctgTCCAGCGTCAGAACAGAGATCTGACACGAGTATAGCCTGATGAAGCAGCGCATGGCTTCAGTCTCACACCGCTGTGGTCATGAGTGTTcagtgtCCGCGGCGTGAGGTCGAGGGCTCCGAGATGCCCGGGGGCCGCA

Function

symbol description
tmem39a Predicted to be involved in negative regulation of autophagosome assembly and negative regulation of autophagosome maturation. Predicted to act upstream of or within autophagy. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human TMEM39A (transmembrane protein 39A).

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:1902902 negative regulation of autophagosome assembly biological_process
GO:1901097 negative regulation of autophagosome maturation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1928 Predicted to be involved in negative regulation of autophagosome assembly and negative regulation of autophagosome maturation. Predicted to act upstream of or within autophagy. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human TMEM39A (transmembrane protein 39A).

Ensembl:

ensembl_id ENSDARG00000102746

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001417 False 1472 mRNA 0.62 7 39313 44484
TCONS_00001418 False 2207 mRNA 0.62 9 39325 44565
TCONS_00001419 False 905 mRNA 0.63 5 41333 44534
TCONS_00001420 False 493 lncRNA 0.61 3 42040 42838
TCONS_00003283 False 1300 lncRNA 0.60 4 42040 44546
TCONS_00001421 False 411 nonsense_mediated_decay 0.64 3 42204 44546
TCONS_00001422 False 521 mRNA 0.62 3 42480 44314
TCONS_00001423 False 807 lncRNA 0.59 2 42839 44546
TCONS_00001424 True 196 mRNA 0.58 2 43385 43782

Neighbor

gene id symbol gene type direction distance location
XLOC_000902 rpl24 coding downstream 27286 6408 ~ 12027 (-)
XLOC_000904 ildr1a coding upstream 274 44839 ~ 50247 (-)
XLOC_000905 si:zfos-1011f11.2 coding upstream 16414 60979 ~ 65017 (-)
XLOC_000906 gpa33a coding upstream 21140 65705 ~ 71523 (-)
XLOC_000907 FP067451.1 coding upstream 63720 108285 ~ 147846 (-)
XLOC_000908 NA coding upstream 96724 141289 ~ 142119 (-)
XLOC_000927 NA non-coding upstream 734010 778575 ~ 779614 (-)
XLOC_000929 NA non-coding upstream 961372 1005937 ~ 1014866 (-)
XLOC_000930 CU611053.1 non-coding upstream 1006376 1050941 ~ 1051057 (-)

Expression


Co-expression Network