Gene
RNA
| Item | Value |
|---|---|
| gene id | G169482 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000034 |
| NCBI id | null |
| chromosome length | 5914002 |
| location | 1676497 ~ 1677646 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU192551 | True | 1150 | lncRNA | 0.44 | 1 | 1676497 | 1677646 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000034_01657515_01658817 | NA | coding | upstream | 17391 | 1657210 ~ 1659106 (+) |
| CI01000034_01637348_01637904 | NA | coding | upstream | 38488 | 1636611 ~ 1638009 (+) |
| CI01000034_01632580_01633233 | NA | coding | upstream | 42972 | 1632002 ~ 1633525 (+) |
| CI01000034_01383935_01395565 | NA | coding | upstream | 280049 | 1383591 ~ 1396448 (+) |
| CI01000034_01305634_01306636 | NA | coding | upstream | 369653 | 1305634 ~ 1306844 (+) |
| CI01000034_01729413_01730790 | EVE1 | coding | downstream | 51767 | 1729413 ~ 1731179 (+) |
| CI01000034_01764505_01767882 | ATP5G1, ATP5G3 | coding | downstream | 86859 | 1764505 ~ 1767922 (+) |
| CI01000034_01769963_01776287 | UBE2Z | coding | downstream | 90329 | 1767975 ~ 1776720 (+) |
| CI01000034_01811735_01836960 | IGF2BP1 | coding | downstream | 133821 | 1811467 ~ 1836960 (+) |
| CI01000034_01858418_01860499 | NA | coding | downstream | 180772 | 1858418 ~ 1861085 (+) |
| G169578 | NA | non-coding | upstream | 57122 | 1619099 ~ 1619375 (+) |
| G169577 | NA | non-coding | upstream | 58459 | 1617759 ~ 1618038 (+) |
| G169570 | NA | non-coding | upstream | 68663 | 1607527 ~ 1607834 (+) |
| G169569 | NA | non-coding | upstream | 69523 | 1606766 ~ 1606974 (+) |
| G169565 | NA | non-coding | upstream | 71476 | 1602375 ~ 1605021 (+) |
| G169477 | NA | non-coding | downstream | 13384 | 1691030 ~ 1692070 (+) |
| G169611 | NA | non-coding | downstream | 149937 | 1827583 ~ 1830891 (+) |
| G169620 | NA | non-coding | downstream | 216834 | 1894480 ~ 1910064 (+) |
| G169606 | NA | non-coding | downstream | 272784 | 1950430 ~ 1952366 (+) |
| G169340 | NA | other | upstream | 365619 | 1250219 ~ 1310878 (+) |
| G169394 | NA | other | upstream | 482937 | 1150297 ~ 1193560 (+) |
| G169357 | NA | other | upstream | 557478 | 1053543 ~ 1119019 (+) |
| G169309 | NA | other | upstream | 706576 | 969261 ~ 969921 (+) |
| CI01000034_00643011_00645310 | RBX1 | other | upstream | 1030087 | 642901 ~ 645310 (+) |
| G169806 | NA | other | downstream | 640327 | 2317973 ~ 2337690 (+) |
| CI01000034_03432846_03437608 | NDUFA4, NDUFA4L | other | downstream | 1756490 | 3432846 ~ 3438839 (+) |
| CI01000034_04125435_04125780 | RPRML | other | downstream | 2447454 | 4125100 ~ 4126825 (+) |
| CI01000034_04192675_04200041 | NA | other | downstream | 2516992 | 4192311 ~ 4200636 (+) |
