G170172


Basic Information

Item Value
gene id G170172
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 3434136 ~ 3451849 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU193347
GTCCTATTCTCTCAGTGGAAGAGATACTGCTGGAGTTCTCGAACGGCCCTCGCTTGATTCCTTCATTTCTGTACTTTTTTGGGAGATTTTAAATCATCTCATCAATCACAATGCTGAGCACGGTCAGCCGGCAACTCAGAAGCCATCCTGCCTTGATCCCACTATTTATTTTCATTGGCGGTGGATGTACCATGTCTCTTTCATATCTGGCTCGCCTGGCAATGCGCAACCCTGATGTCTGCTGGGACAAAAAGAACAACCCAGAGCCTTGGAATAAACTGGGTCCCAATGATCAGTACAAGTTCTTCTCAGTGAACATGGACTACAGCAAGCTGAAGAAGGACCGTCCTGACTACTAAACGCATCCAGAGAATCCAGATGCCCAGTGCCTGACCAAAGGCTTAAAAATCAAACTAAAGAACAACAAGATGTCCACACACTTTTCCTCAATGGCCCTTGTTCCTATATTAATTTATGCAAAGAGACTAAATTACACAGATGTTGTCTTTGCTTATCTGGATCCTTTTTAACATCTATGATGTCTTGTGTATTTTCTTCCCATACTTTTTAGTCAGAGACGATTAATAAAGGGTTTTCTCCCATATACATTGAAAAACCAGTTGATGAGTCGTGATTATGTTGGTGTTTGTATGAATTTCAGAACAAGCTTCTCCGTGCTGACCAACAGAAAGCTGCTTGGTTAGAAACTGACTTCTGACTGAGCTGTGCTCTGTACTGTTCTATGCTTTTAACAGTGGGTAATTGTCAATTTTACTTAAGTTGGATTATTTTAATATATTAACAATAATTGTATAAATGTCAGTTTAATAATTTAAGTCAACATCACTACTTCGAGCAACCGTGTAGCACAGTGGTTCTCATCTAGGGCTCCGGGGCCTACTAAGGCACCTCGGCAACCTTCCAAGGGAGCAGCTGCTGTATGGTTGCTCTAGTATGTTGGCATCAAGATGTTTTCTTCTATAGCTGAGAGTAGTGAGGTGTTAAAATGGAGAAATGTTGCCTTTGCCCACGTCCATTATGTTATCTAGCCATGTTACTTAACTCATGAGGCGCATACATCAGTGCTAATAGGATGAAACTGATTCTGATTTTTGCTGCCTATTTGAGCAAAGTCATTACATTTTACTTCACCTAATAATTTCAGTTATATGGTGAATATTGGTGACAGTTGTTTAAAGGGTTAGTTCACCCAAAAATGAAATTTATGTCATTAAGTACTCACCCTCATGTCGTCCCAAACCTGTAAGACCTTCGTTTGTCTTCGGAACACAAATTATGATATTTTTGATGAAATCCGAGGGTTTCTGATCCACACATAGGCAGCAACGACATTACACCTTTTGAGGTCCAGAAAGGTACTAAAGACATCATTAAAACCGTCAATGTGACTACAGTGGTTCAACCTTAATATTATGAAGCGACGAGAATACTTTTTGTGAGCAAAAACAAAACAAAAATAACGACTTTATTCAACAAATTCATCTGTCCCCTGTCATACTGCTACGCTATTTTCGTTGCAGAGCTTCAGTGTTTATGACCAAACGGCAGCTCAGTATTGGCCGGATCTGG
>TU193348
GTCCTATTCTCTCAGTGGAAGAGATACTGCTGGAGTTCTCGAACGGCCCTCGCTTGATTCCTTCATTTCTGTACTTTTTTGGGAGATTTTAAATCATCTCATCAATCACAATGCTGAGCACGGTCAGCCGGCAACTCAGAAGCCATCCTGCCTTGATCCCACTATTTATTTTCATTGGCGGTGGATGTACCATGTCTCTTTCATATCTGGCTCGCCTGGCAATGCGCAACCCTGATGTCTGCTGGGACAAAAAGAACAACCCAGAGCCTTGGAATAAACTGGGTCCCAATGATCAGTACAAGTTCTTCTCAGTGAACATGGACTACAGCAAGCTGAAGAAGGACCGTCCTGACTACTAAACGCATCCAGAGAATCCAGATGCCCAGTGCCTGACCAAAGGCTTAAAAATCAAACTAAAGAACAACAAGATGGCCCTTGTTCCTATATTAATTTATGCAAAGAGACTAAATTACACAGATGTTGTCTTTGCTTATCTGGATCCTTTTTAACATCTATGATGTCTTGTGTATTTTCTTCCCATACTTTTTAGTCAGAGACGATTAATAAAGGGTTTTCTCCCATATACATTGAAAAACCAGAAAAAAAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU193347 False 152 lncRNA 0.40 1 3434136 3434287
TU193348 True 162 TUCP 0.42 2 3434136 3451849

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110538650 ndua4 misc NC_048576.1 CM023230.2 82345174 ~ 82373637 (+)