XLOC_000904 (ildr1a)


Basic Information

Item Value
gene id XLOC_000904
gene name ildr1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 44839 ~ 50247 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001425
AACTCTTGGTCAGAGCAGACACTGTGCGCGTTTCCCCAGGAAGGTGTAGAAAAGGAGAGATCAGAGTTTACCTGCGCCTTTACCTGTAGAGCAGCGGGAATACTGCAGCCGTCTCTGGACACGCGGAGGACACggacacacggacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccatcaggcGTCTCTGTGCGCATATTAAAGCACGGCTGCTTCCATGGGCCTGCAATACTGTGATGTACATCCCCCATGAAGCAGAGGCACACCTGTGCGCATGCGCCCGAGATGCACCTGTTTCGGTGGGTGGAgccctgatgatgatgatgatgatgagtggaGACGGACTACAGCAGAGAAACACACACCTGCCCAGAGACACACACAACTCCTGTATCTCCACACACACCTGCAGGAAGACCCGCTCGAGGAGCTGAAATGCTGATCTGACGGAGCTGCTCACCGGTACTGACACGCGCGCTGTTTCCGCTTCCGCTTGCCGGAGTTTCAGCAGATCATCATGATGAGGGGAATGATCAGgtgtgtgctgctgctgctgagtgTGCTGATCTCAGatGTTATGTCTATCCAGGTGATTCTGACCAATCAGCAGATGAGCACGACTCTGTTCGCCACGGTGACGCTGCGCTGTGATTACTCCACCTCCGCTCAGCTGCAGAATGTTCTGGTCACCTGGGTTTACAAGTCCTTCTGCAAAGACCCTGTTCTGGACTACTACTCTGCAGcgTATCAGTCTGCTCTGCAGCTGGGTCAGAACCCCGCCAATGACTGCACGGACTCGCAGCGCACCATCCGGACAGTGGCTCAGAAACTGGGCACTAATGAGGCGGTGCTGGGGGCCGAATACCGGGACCGCAAGATCTACATCCAGAACAaggCGGACCTGGTGATCCAAGAGGTGATGTGGTGGGATAACGGTGTGTATTACTGTAAAGTGGACGCGCCCGGAGACACCATCGGAGACCCAGACAAGGAGATGAACCTCATCGTCTACAACTGGCTGACGGTGCTCCTGATACTCATCGGTGCGCTGCTCCTCATCATCCTCTTCTGCATCTGCTGCTGCCAGTGCTGCCCACAGAAGTGCTGCTGTTACGTGCGCTGCCCGTGCTGCCCGCAGACCTGCTGCTGCCCGGAGAAAGcTGTGATGCAGCACCGGCTGATGAAGGAGGCGCAGAGGGCCATGACGCCCTGGATGAACGGGCAGCCGCTGTACGCCCCCATGAGCAACCACAGCTCCAGCTACCAGATGAACCCGCTGCTGTACGCAGGCTCCACCGCAGGTAAGGGCCCCATGACGCCACTGCCGCTGCCGCCTCCGCAGATGCCCGTCACACAGATGCCCCTCATGCAGATGCCTCCTCCCAGCATGCACGGCAATGGCAGCGCCCATGGCACCAATCAGGTCCTGGACTACCTGGAGAACCAGATGCGGGGCATAGACGTGAACAGCCCGCTCCTGCCCCCTCCACCGCAGCATGTGCCCCAGCACGTGCCCTTCTCCGCCGGGCCACCCAGCATGCTCTCTGGGCTGGAGGATGTCCCCGCGAAGCGTCCCCGTGGCCACCCGCACGCAAACTCCAGCGGCTCCTCAGCGTACGGCCCACGCCGCGGCCCCCCCACCTCGCTGCCGCGCAGCTACAGCCAGGAGGATGTGTTGGAGGGCCGCAGGGGCGCCGGAGCTCACAGACCCCGCTCGCGCTCCAGAGACGACCTGCTGCACACCGGCCCCCAGTACAGTCCGGCCCGCCGCGGCTCCTGGAGCTCCACTGATGAGGGCAGCCGGCGCGGGCCATGGGGGGGCAGGGAGTACGAGCCCGGGAAGAAGCCAGCGAAGCGACCCGAAAGATTCTCTGATAAGGGCTCTCGCAGTGGAAACAGCATCATCATCTGATCTCCATCTCCTCCTCCACCCACTGGACTCCGTCTGGTCTCCATCAGCTGTTACACTGACtgcagatcagtgtgtgtgtgtttcacaccGCTGTGCAGAGCAGCTTACACACTCCAGTGAATGTGAACATTAGCAAACATCCTCCGCTAACTGCTGAGGGCACTCATTTATGGGTACTTGGGTTTTAGGAATCAACTGTGTAAATATGACATGTGCTCAATATATTTATGATGAAGAGAGATTTAACAGTTCAGCTCCAGCATTTACCAGCCAGAGAGTGCACTACAGCACACTGTACACTACATAGTGCACTACACTATACAGTACACTATATAATACACTACACAGAACATACAGTACACTACATTATAATACACTATACAGTGCACTATAACAGCAGCTCGGAGCCTCTGTGATGATGGACCGCTGGGTTACTGAGCTACTGATCTGATGGAGatgctgattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtcgcTGTTCTTCTGTAAATAGTGTTGGAGTGTGAGTTGACCGTCTCTGTCCCGTTAGCCTGCAGGATTGTGATGTTTTTACTGTACATGATGAATATATTATTTTCCACCTGCTTCAATAaactgtgtgtgtaaatgtg
>TCONS_00001426
CAAGTCCTTCTGCAAAGACCCTGTTCTGGACTACTACTCTGCAGTCTGCTCTGCAGCTGGGTCAGAACCCCGCCAATGACTGCACGGACTCGCAGCGCACCATCCGGACAGTGGCTCAGAAACTGGGCACTAATGAGGCGGTGCTGGGGGCCGAATACCGGGACCGCAAGATCTACATCCAGAACAaggCGGACCTGGTGATCCAAGAGGTGATGTGGTGGGATAACGGTGTGTATTACTGTAAAGTGGACGCGCCCGGAGACACCATCGGAGACCCAGACAAGGAGATGAACCTCATCGTCTACAACTGGCTGACGGTGCTCCTGATACTCATCGGTGCGCTGCTCCTCATCATCCTCTTCTGCATCTGCTGCTGCCAGTGCTGCCCACAGAAGTGCTGCTGTTACGTGCGCTGCCCGTGCTGCCCGCAGACCTGCTGCTGCCCGGAGAAAGcTGTGATGCAGCACCGGCTGATGAAGGAGGCGCAGAGGGCCATGACGCCCTGGATGAACGGGCAGCCGCTGTACGCCCCCATGAGCAACCACAGCTCCAGCTACCAGATGAACCCGCTGCTGTACGCAGGCTCCACCGCAGGTAAGGGCCCCATGACGCCACTGCCGCTGCCGCCTCCGCAGATGCCCGTCACACAGATGCCCCTCATGCAGATGCCTCCTCCCAGCATGCACGGCAATGGCAGCGCCCATGGCACCAATCAGGTCCTGGACTACCTGGAGAACCAGATGCGGGGCATAGACGTGAACAGCCCGCTCCTGCCCCCTCCACCGCAGCATGTGCCCCAGCACGTGCCCTTCTCCGCCGGGCCACCCAGCATGCTCTCTGGGCTGGAGGATGTCCCCGCGAAGCGTCCCCGTGGCCACCCGCACGCAAACTCCAGCGGCTCCTCAGCGTACGGCCCA
>TCONS_00001427
ctcagaggCGGACCTGGTGATCCAAGAGGTGATGTGGTGGGATAACGGTGTGTATTACTGTAAAGTGGACGCGCCCGGAGACACCATCGGAGACCCAGACAAGGAGATGAACCTCATCGTCTACAACTGGCTGACGGTGCTCCTGATACTCATCGGTGCGCTGCTCCTCATCATCCTCTTCTGCATCTGCTGCTGCCAGTGCTGCCCACAGAAGTGCTGCTGTTACGTGCGCTGCCCGTGCTGCCCGCAGACCTGCTGCTGCCCGGAGAAAGcTGTGATGCAGCACCGGCTGATGAAGGAGGCGCAGAGGGCCATGACGCCCTGGATGAACGGGCAGCCGCTGTACGCCCCCATGAGCAACCACAGCTCCAGCTACCAGATGAACCCGCTGCTGTACGCAGG
>TCONS_00003284
GCCCAGAGACACACACAACTCCTGTATCTCCACACACACCTGCAGGAAGACCCGCTCGAGGAGCTGAAATGCTGATCTGACGGAGCTGCTCACCGGTACTGACACGCGCGCTGTTTCCGCTTCCGCTTGCCGGAGTTTCAGCAGATCATCATGATGAGGGGAATGATCAGgtgtgtgctgctgctgctgagtgTGCTGATCTCAGatGTTATGTCTATCCAGGTGATTCTGACCAATCAGCAGATGAGCACGACTCTGTTCGCCACGGTGACGCTGCGCTGTGATTACTCCACCTCCGCTCAGCTGCAGAATGTTCTGGTCACCTGGGTTTACAAGTCCTTCTGCAAAGACCCTGTTCTGGACTACTACTCTGCAGcgTATCAGTCTGCTCTGCAGCTGGGTCAGAACCCCGCCAATGACTGCACGGACTCGCAGCGCACCATCCGGACAGTGGCTCAGAAACTGGGCACTAATGAGGCGGTGCTGGGGGCCGAATACCGGGACCGCAAGATCTACATCCAGAACAaggCGGACCTGGTGATCCAAGAGGTGATGTGGTGGGATAACGGTGTGTATTACTGTAAAGTGGACGCGCCCGGAGACACCATCGGAGACCCAGACAAGGAGATGAACCTCATCGTCTACAACTGGCTGACGGTGCTCCTGATACTCATCGGTGCGCTGCTCCTCATCATCCTCTTCTGCATCTGCTGCTGCCAGTGCTGCCCACAGAAGTGCTGCTGTTACGTGCGCTGCCCGTGCTGCCCGCAGACCTGCTGCTGCCCGGAGAAAGcTGTGATGCAGCACCGGCTGATGAAGGAGGCGCAGAGGGCCATGACGCCCTGGATGAACGGGCAGCCGCTGTACGCCCCCATGAGCAACCACAGCTCCAGCTACCAGATGAACCCGCTGCTGTACGCAGG
>TCONS_00001428
ATCATGATGAGGGGAATGATCAGgtgtgtgctgctgctgctgagtgTGCTGATCTCAGatGTTATGTCTATCCAGGTGATTCTGACCAATCAGCAGATGAGCACGACTCTGTTCGCCACGGTGACGCTGCGCTGTGATTACTCCACCTCCGCTCAGCTGCAGAATGTTCTGGTCACCTGGGTTTACAAGTCCTTCTGCAAAGACCCTGTTCTGGACTACTACTCTGCAGcgTATCAGTCTGCTCTGCAGCTGGGTCAGAACCCCGCCAATGACTGCACGGACTCGCAGCGCACCATCCGGACAGTGGCTCAGAAACTGGGCACTAATGAGGCGGTGCTGGGGGCCGAATACCGGGACCGCAAGATCTACATCCAGAACAaggCGGACCTGGTGATCCAAGAGGTGATGTGGTGGGATAACGGTGTGTATTACTGTAAAGTGGACGCGCCCGGAGACACCATCGGAGACCCAGACAAGGAGATGAACCTCATCGTCTACAGTAATTACAGATCACATGACCACACCAGCAGCCAATTACATCAGCCCTTAGAATACACACTCATGATCACACAATCAGACTgctttaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
>TCONS_00001429
GACACACACAACTCCTGTATCTCCACACACACCTGCAGGAAGACCCGCTCGAGGAGCTGAAATGCTGATCTGACGGAGCTGCTCACCGGTACTGACACGCGCGCTGTTTCCGCTTCCGCTTGCCGGAGTTTCAGCAGATCATCATGATGAGGGGAATGATCAGgtgtgtgctgctgctgctgagtgTGCTGATCTCAGatGTTATGTCTATCCAGGTGATTCTGACCAATCAGCAGATGAGCACGACTCTGTTCGCCACGGTGACGCTGCGCTGTGATTACTCCACCTCCGCTCAGCTGCAGAATGTTCTGGTCACCTGGGTTTACAAGTCCTTCTGCAAAGACCCTGTTCTGGACTACTACTCTGCAGCTGGGTCAGAACCCCGCCAATGACTGCACGGACTCGCAGCGCACCATCCGGACAGTGGCTCAGAAACTGGGCACTAATGAGGCGGTGCTGGGGGCCGAATACCGGGACCGCAAGATCTACATCCAGAACAaggCGGACCTGGTGATCCAAGAGGTGATGTGGTGGGATAACGGTGTGTATTACTGTAAAGTGGACGCGCCCGGAGACACCATCGGAGACCCAGACAAGGAGATGAACCTCATCGTCTAC
>TCONS_00001430
GCCCAGAGACACACACAACTCCTGTATCTCCACACACACCTGCAGGAAGACCCGCTCGAGGAGCTGAAATGCTGATCTGACGGAGCTGCTCACCGGTACTGACACGCGCGCTGTTTCCGCTTCCGCTTGCCGGAGTTTCAGCAGATCATCATGATGAGGGGAATGATCAGgtgtgtgctgctgctgctgagtgTGCTGATCTCAGatGTTATGTCTATCCAGGTGATTCTGACCAATCAGCAGATGAGCACGACTCTGTTCGCCACGGTGACGCTGCGCTGTGATTACTCCACCTCCGCTCAGCTGCAGAATGTTCTGGTCACCTGGGTTTACAAGTCCTTCTGCAAAGACCCTGTTCTGGACTACTACTCTGCAGGTGATGCtcctga

Function

symbol description
ildr1a Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in EVL; ectoderm; and sensory system. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 42. Orthologous to human ILDR1 (immunoglobulin like domain containing receptor 1).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1412 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in EVL; ectoderm; and sensory system. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 42. Orthologous to human ILDR1 (immunoglobulin like domain containing receptor 1).

Ensembl:

ensembl_id ENSDARG00000103929

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001425 False 2623 mRNA 0.56 8 44839 50247
TCONS_00001426 False 917 mRNA 0.62 6 46037 48933
TCONS_00001427 False 402 lncRNA 0.60 3 47420 48077
TCONS_00003284 False 923 lncRNA 0.58 6 47420 49842
TCONS_00001428 False 632 lncRNA 0.52 4 47820 49695
TCONS_00001429 False 618 nonsense_mediated_decay 0.56 4 47954 49835
TCONS_00001430 True 389 lncRNA 0.54 2 48877 49842

Neighbor

gene id symbol gene type direction distance location
XLOC_000903 tmem39a coding downstream 274 39313 ~ 44565 (-)
XLOC_000902 rpl24 coding downstream 32812 6408 ~ 12027 (-)
XLOC_000905 si:zfos-1011f11.2 coding upstream 10732 60979 ~ 65017 (-)
XLOC_000906 gpa33a coding upstream 15458 65705 ~ 71523 (-)
XLOC_000907 FP067451.1 coding upstream 58038 108285 ~ 147846 (-)
XLOC_000908 NA coding upstream 91042 141289 ~ 142119 (-)
XLOC_000909 pcid2 coding upstream 101760 152007 ~ 157563 (-)
XLOC_000927 NA non-coding upstream 728328 778575 ~ 779614 (-)
XLOC_000929 NA non-coding upstream 955690 1005937 ~ 1014866 (-)
XLOC_000930 CU611053.1 non-coding upstream 1000694 1050941 ~ 1051057 (-)

Expression


Co-expression Network