Gene
RNA
| Item | Value |
|---|---|
| gene id | G170537 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000034 |
| NCBI id | null |
| chromosome length | 5914002 |
| location | 4318600 ~ 4319988 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU193741 | True | 1389 | lncRNA | 0.50 | 1 | 4318600 | 4319988 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000034_04282490_04284734 | NA | coding | upstream | 33064 | 4282490 ~ 4285536 (+) |
| CI01000034_04260286_04274615 | NA | coding | upstream | 43198 | 4260286 ~ 4275402 (+) |
| CI01000034_04251494_04257594 | ANKRD54 | coding | upstream | 60743 | 4251494 ~ 4257857 (+) |
| CI01000034_04244137_04250139 | FOXRED2 | coding | upstream | 68007 | 4244137 ~ 4250593 (+) |
| CI01000034_04229970_04238150 | MCM5.S, MCM5, MCM5.L | coding | upstream | 80133 | 4229970 ~ 4238467 (+) |
| CI01000034_04364393_04367046 | S1PR5, S1PR5A | coding | downstream | 44326 | 4364314 ~ 4367204 (+) |
| CI01000034_04473631_04513799 | RFX1, RFX1A | coding | downstream | 153643 | 4473631 ~ 4514545 (+) |
| CI01000034_04525428_04534655 | NA | coding | downstream | 205013 | 4525001 ~ 4535684 (+) |
| CI01000034_04548660_04597274 | GRIN2C | coding | downstream | 228599 | 4548587 ~ 4597396 (+) |
| CI01000034_04641898_04648112 | NA | coding | downstream | 321038 | 4641026 ~ 4648150 (+) |
| G170528 | NA | non-coding | upstream | 97104 | 4221283 ~ 4221496 (+) |
| G170240 | NA | non-coding | upstream | 97997 | 4218753 ~ 4220603 (+) |
| G170527 | NA | non-coding | upstream | 100444 | 4217889 ~ 4218156 (+) |
| G170526 | NA | non-coding | upstream | 100871 | 4216212 ~ 4217729 (+) |
| CI01000034_04192675_04200041 | NA | non-coding | upstream | 125813 | 4192311 ~ 4200636 (+) |
| G170545 | NA | non-coding | downstream | 14989 | 4334977 ~ 4335206 (+) |
| G170554 | NA | non-coding | downstream | 29650 | 4349638 ~ 4349878 (+) |
| G170559 | NA | non-coding | downstream | 35914 | 4355902 ~ 4356118 (+) |
| G170562 | NA | non-coding | downstream | 40831 | 4360819 ~ 4361310 (+) |
| G170563 | NA | non-coding | downstream | 42740 | 4362728 ~ 4363122 (+) |
| CI01000034_04125435_04125780 | RPRML | other | upstream | 191789 | 4125100 ~ 4126825 (+) |
| CI01000034_03432846_03437608 | NDUFA4, NDUFA4L | other | upstream | 866751 | 3432846 ~ 3438839 (+) |
| G169806 | NA | other | upstream | 1980910 | 2317973 ~ 2337690 (+) |
| CI01000034_01729413_01730790 | EVE1 | other | upstream | 2587423 | 1729413 ~ 1731179 (+) |
