G170205


Basic Information

Item Value
gene id G170205
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4410355 ~ 4416851 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU193381
TCAAAAATAATGAAAGGGCTAATTTAATTAGTTGTTAATTTGCAACCATGTTTCTTTTTGGCTATACAACTTAACATGAAAAGCAGAAAAACTGAACTTTTTTTGTATAATTACTGTAAAGGCATATTTTAATTTAGATTAGCATTACTCTCTGCAGATATGCTTTACAGTAACGCAGTGAAACTAAGAAACACATTCAATAGACAATGTAATGCTCATGTGGGGTAAAACTAGGCCTGATGTTCCCTGATGTTGCGTCTGATGTACATGTAGAAACAAGCATTCGCATTTATGAACTGTTTTGCTAATCTTATTTTGAGAATCGGAATTAGGTTATGAATGTGTGAACTGCTGTTTGCAAATACATATACACAATGTAAATTAGTTCACACATTTATAATAAAGCAATAAGCCCCAAGAAGCCATGATTTACTGTGAATTTAGAGCAGCTAAGGGGTTTACAATTTAGCTGTTCTAGCTGTTTTAGCCATAGATATGTATACGTAGATGCCTTATTCCACCGCTCCAGACACGGCGGCACGCCCGCCATCTTGTCACGGTCAGGGTGTCATCACTCACAGTAAGAATCATTGATGGCACAATATTGTGCAGCTTCTGGTTGTGAAACTGCCGAGATTTAAATTCCAGAAGAAATAGGATAACAGGTGAGAATGTGTTGGTTTGTGTTTTTCAACTTCAGTTTAGTTTTTTCTAATTTCAGTTTCTGTATTTCTAAACTTAGTTTGGTCTTTTCCAGTGTCAGTACTTCATATTGTTTTTCCAGTATATGATTCATGGTAATGCTGGTTGGAGGGTCTTTCTGTGTCTCAGTGTCCGAGCCACTTGCTGCAGGACAGGTGTCACCTGGGTGCTGCCCAAATCATCTTAATTAAAAAATAAAAAAATAGCAACATTAGGGGGTGACAGAAACAATATGTTTGTTGTAAAAATTCTCTGGCAGAATGCTTTTGCTACTGCATGTTAGTTAACTTAGTGAGATATGACTCGTGGTTGTAAGATTGTAAGCTTGAGCTTTACCTTCACTTTTCTGTTTGATTCTTGTTTGTGACTGGGGCATCTTCATCTTGAGTGACTAATGTTATCAAAAGAGAGGAGAACGTTACCTAGCAACTCTGTTATTGTGGTCCAAGCCTTGTGTTTTTTTTTGTTTGCATTGTAATTACTATATTTATTAATTTATATTCATATTCAACTGATTTGGCTGCACTGTCTTTCTTGAATACACAAATGTTTTCAGCAAAAACTTAAAATAAGGAGAGATCGATCACTTAGCTGATTTTCAGAGGCCCTCTGCAGGACCAGCTTACAGCGATTGCTTTCAATCTATCTGGGTTTACATACTTGCAGTACATAAAGTTTGTAGTTTGTAGATGAGATTTAAAGAGACTCACCACAGCCTTTCTCATCCGCACCATTCGAACAGTCCTCGTCACCATCACACCTCCATATCATAGGCAGACACGTTTTACGTTTATCATCACAGCTGAACTGATTGGATCCACAGGTCTTGACTGCTGATCAAAGCAAAAATTATACAAATACTAAAACAAAAACAAACAGAGAATCATGACATCTGTCGGCAGAAGTAATACTTCAGTGGTGGAGTTCTGAAAAGTTAGGCAAAGTCCTCACTTTGTGAAAATAAATTGTACACACATAAATAGATAGATACATACACATACTTATACCATGGTCTGCGTGTCTGAATACTCGATTCTGATTGGCTGGAAGGTGTGCATTAAAACAGTTTAGTGCGCAGATAGTTCCAGTCACTTTTTAATCACTGTTCTGTATTAATGTGCTGCTTTCATTGAAGCTTACATCAGTGTTTTTGAAACTCACAGTTTCACTATTAGTAGAAAGATGTTGCTTGGACACAGGTAATTCACACACGCATCTCTAATCTTCCTCTCTCTCCCTCTCTCAATAATTCATTCAAATAAATGCTATAATTCATTCATTCAAATAAATTTAATCTTACCGCACTACTTTATCCCTGTATCTGTTTTAAAGTGGGCAGAATGCTAGATCTAACAAACCGTAACTGATGAAAATGTACCATCATTTTTACCCTACCAGTCAATTATTGCACTGCAAACACCAATAACAGCTTCATCTTGTCAAAGCTGGCAAACGACCATGGTAAAAGCGGAATAACCCATGGCTAGCTGTGCATTAAACTATAGATTTAAAAAGACTCACCACAGCCTTCCTCATCCGCATTATTCGGACAGTCCTCGTTACCATCACACCTCCATATCATAGGCAGACATGTTTCGCGTTTATCACCGCAGCTGAACTCAGTGAGTTCGCAGGTCCTGACCACTGATCAAAGAAAAAATAAAACAAAAACCAACTGAGAATCAAGACATATGTTGGCAAAAGTATGTAATACTTCAGTGGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU193381 True 2425 lncRNA 0.37 3 4410355 4416851

Neighbor

gene id symbol gene type direction distance location
CI01000034_04364393_04367046 S1PR5, S1PR5A coding upstream 43151 4364314 ~ 4367204 (+)
CI01000034_04282490_04284734 NA coding upstream 124819 4282490 ~ 4285536 (+)
CI01000034_04260286_04274615 NA coding upstream 134953 4260286 ~ 4275402 (+)
CI01000034_04251494_04257594 ANKRD54 coding upstream 152498 4251494 ~ 4257857 (+)
CI01000034_04244137_04250139 FOXRED2 coding upstream 159762 4244137 ~ 4250593 (+)
CI01000034_04473631_04513799 RFX1, RFX1A coding downstream 56780 4473631 ~ 4514545 (+)
CI01000034_04525428_04534655 NA coding downstream 108150 4525001 ~ 4535684 (+)
CI01000034_04548660_04597274 GRIN2C coding downstream 131736 4548587 ~ 4597396 (+)
CI01000034_04641898_04648112 NA coding downstream 224175 4641026 ~ 4648150 (+)
CI01000034_04728112_04738169 GAA coding downstream 309998 4726849 ~ 4738327 (+)
G170232 NA non-coding upstream 1096 4405633 ~ 4409259 (+)
G170563 NA non-coding upstream 47233 4362728 ~ 4363122 (+)
G170562 NA non-coding upstream 49045 4360819 ~ 4361310 (+)
G170559 NA non-coding upstream 54237 4355902 ~ 4356118 (+)
G170554 NA non-coding upstream 60477 4349638 ~ 4349878 (+)
G170178 NA non-coding downstream 26777 4443628 ~ 4446909 (+)
G170223 NA non-coding downstream 133644 4550495 ~ 4562847 (+)
G170579 NA non-coding downstream 204988 4621839 ~ 4622328 (+)
G170620 NA non-coding downstream 290812 4707663 ~ 4707873 (+)
G170644 NA non-coding downstream 355455 4772306 ~ 4773521 (+)
CI01000034_04192675_04200041 NA other upstream 212154 4192311 ~ 4200636 (+)
CI01000034_04125435_04125780 RPRML other upstream 283544 4125100 ~ 4126825 (+)
CI01000034_03432846_03437608 NDUFA4, NDUFA4L other upstream 958506 3432846 ~ 3438839 (+)
G169806 NA other upstream 2072665 2317973 ~ 2337690 (+)
CI01000034_01729413_01730790 EVE1 other upstream 2679178 1729413 ~ 1731179 (+)

Expression


Co-expression Network