G170178


Basic Information

Item Value
gene id G170178
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4443628 ~ 4446909 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU193354
CTCCTGGAGGATCTCCACTGGGTCCAGACCCCGAGGTTTCTGGATGGGTGTGATGCGGTTCTGCTTCTGATGCAACATCATGGGCGGCTGGGCCGGTTGTCCTGGAGACTGGGTCTGAGGGGGCATGACGGGAGAGGCAGCGGGAGGAACTGAAGGTGGCGCTGGAGAAGGGCGGCCCGTGGGCTGAGGAGGTATCAGCTTCTGTGGGGCACTTGCAGGGGCGGCAGCGTTCACCATGGGCCCTTCAGGCCAAGCTTTAGGTGGTCCATTGGTGGGTTGTCCCTGCAGGCCTGGAGGAACACCAGAGGGTCCTGGAGGAGGCATGTTTGGACCGACCATTCCAGTTGGTCGATTGTAGTTGGGTCCTCCAGGACCGGGACCCCCAGGTCCAGGCGGTCCTGCTCCTTGTCCTGAAGCGGGGGGCATGTTGGGCATCCCCTGTTGCATGCCTGGCATGGGCCGCTTTCCCTGCACGGCCATCTGCAGGTGGTCAGGTAGAGGCTGCCCACGCGCCAGCATCTTATAGGCCATGATCTGTGCCCGCAGCTGGTGAAGCTGGTTTTGGTTGAAAGGAGTGGGTCCGCCGGCACCACCAGGCCCACCTGCGTTTGGAGGTCCTCCGCTGGGTCCCGAACCTGCAACAGCACCTGTACCTCCGCTCCGGTTCTGCAGGTCACCGCCCTCCATGGGGACGGCACCAGGACCAGAAGGCATCATGGGGCCAGACGGAGGCCCGTTAGAAGGTACCGGGCTGGGGGCATGTTCAGATCCACCCAGAGGAGAGGGGTAACCTTGAGAGTGTTGGTCCATAGGGCTGGGTGGGGGTCCCATGCCACTGTGCCCACCCTGTCTCATGCCCATACCCTTCATTTGACCGTAGCGTTGATCTTCGGGAATGCCTTTCTCGAGCATGCCTTCCATGGGCTTGTGCATGTGCATGTTGTCCTGGGGGTAACCTGAGGGGCCCTGTGGAGGTAGTGGGTGTCCTGAGGAGGGGGGCCCAGGGCTAGGGCCCATCATGCCATGGGCAGAGCCAGGTGAGGGTCCAGGACTAGGCCCTAACATGGCCCCTGGAGACGGCCCAGGGCCTGGGGAAGGGCCCGGCCGAGGGGTCCCGCCCATAGGTGGGTCAGGGGTGGACATCTCTCAGCAGAGCCGGAAGACGTAAGAGGCAGAAAAACAGTGTCCTGTATCCGTTTTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU193354 True 1203 lncRNA 0.63 5 4443628 4446909

Neighbor

gene id symbol gene type direction distance location
CI01000034_04364393_04367046 S1PR5, S1PR5A coding upstream 76424 4364314 ~ 4367204 (+)
CI01000034_04282490_04284734 NA coding upstream 158092 4282490 ~ 4285536 (+)
CI01000034_04260286_04274615 NA coding upstream 168226 4260286 ~ 4275402 (+)
CI01000034_04251494_04257594 ANKRD54 coding upstream 185771 4251494 ~ 4257857 (+)
CI01000034_04244137_04250139 FOXRED2 coding upstream 193035 4244137 ~ 4250593 (+)
CI01000034_04473631_04513799 RFX1, RFX1A coding downstream 26722 4473631 ~ 4514545 (+)
CI01000034_04525428_04534655 NA coding downstream 78092 4525001 ~ 4535684 (+)
CI01000034_04548660_04597274 GRIN2C coding downstream 101678 4548587 ~ 4597396 (+)
CI01000034_04641898_04648112 NA coding downstream 194117 4641026 ~ 4648150 (+)
CI01000034_04728112_04738169 GAA coding downstream 279940 4726849 ~ 4738327 (+)
G170205 NA non-coding upstream 26777 4410355 ~ 4416851 (+)
G170232 NA non-coding upstream 34369 4405633 ~ 4409259 (+)
G170563 NA non-coding upstream 80506 4362728 ~ 4363122 (+)
G170562 NA non-coding upstream 82318 4360819 ~ 4361310 (+)
G170559 NA non-coding upstream 87510 4355902 ~ 4356118 (+)
G170223 NA non-coding downstream 103586 4550495 ~ 4562847 (+)
G170579 NA non-coding downstream 174930 4621839 ~ 4622328 (+)
G170620 NA non-coding downstream 260754 4707663 ~ 4707873 (+)
G170644 NA non-coding downstream 325397 4772306 ~ 4773521 (+)
G170645 NA non-coding downstream 326751 4773660 ~ 4777068 (+)
CI01000034_04192675_04200041 NA other upstream 245427 4192311 ~ 4200636 (+)
CI01000034_04125435_04125780 RPRML other upstream 316817 4125100 ~ 4126825 (+)
CI01000034_03432846_03437608 NDUFA4, NDUFA4L other upstream 991779 3432846 ~ 3438839 (+)
G169806 NA other upstream 2105938 2317973 ~ 2337690 (+)
CI01000034_01729413_01730790 EVE1 other upstream 2712451 1729413 ~ 1731179 (+)

Expression


Co-expression Network