XLOC_000908



Basic Information


Item Value
gene id XLOC_000908
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 141289 ~ 142119 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00003286
CGAAGCATTGATGAACCATTCTACCTCCATAATGTGATTTTACTAGAAATACCATGATATTAATACACATGAGGATTACACTAAAgccacagttcacccaaaaatctacaTTTACCCACTATTTACTGCCAAacatttaagagtttctttcttcttttaaacacaaaagaaaatattctaaAGAAAGCCAAAAGCCTGTAGCCATTGTAATGAAATccgattaaaattaaaatattcataattaaattGCAACttgttatcattaattattaatattcatactTTTAAGTTACACCACTGACCTCCATAGTAAGAATAAAAACCAATAGATAAAGgtgttcaacattcttcagaacttcttcttttgttttataaCAGAAAACTAGAAGCTGGTAAAGGACGAgtaacttttgggtgaactctcccttaaAGCACAGGTAATTAAATGCATATGAAAGATGAGGCTTTCCTCAGAGGAGTCAGACTCTTCTTATTGGTGTCTTGTGCCGCAGCTCTCGCTTTGCTTTGGGTTTTAAAGACGCTCCGGTCTCTGGCATGACTTTCGTCATTGCGTTATTGATCCACATGATGTATTTGGAGACCTGTGTGTAGACGCCGTATTTCCCCTTGCG

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00003286 True 632 lncRNA 0.35 2 141289 142119

Neighbor


gene id symbol gene type direction distance location
XLOC_000906 gpa33a coding downstream 69766 65705 ~ 71523 (-)
XLOC_000905 si:zfos-1011f11.2 coding downstream 76272 60979 ~ 65017 (-)
XLOC_000904 ildr1a coding downstream 91042 44839 ~ 50247 (-)
XLOC_000903 tmem39a coding downstream 96724 39313 ~ 44565 (-)
XLOC_000902 rpl24 coding downstream 129262 6408 ~ 12027 (-)
XLOC_000909 pcid2 coding upstream 9888 152007 ~ 157563 (-)
XLOC_000910 FO681286.1 coding upstream 18183 160302 ~ 206208 (-)
XLOC_000911 grtp1a coding upstream 42796 184915 ~ 192033 (-)
XLOC_000912 dcun1d2b coding upstream 66062 208181 ~ 214911 (-)
XLOC_000913 gas6 coding upstream 170665 312784 ~ 338445 (-)
XLOC_000927 NA non-coding upstream 636456 778575 ~ 779614 (-)
XLOC_000929 NA non-coding upstream 863818 1005937 ~ 1014866 (-)
XLOC_000930 CU611053.1 non-coding upstream 908822 1050941 ~ 1051057 (-)
XLOC_000931 NA non-coding upstream 1001843 1143962 ~ 1253194 (-)
XLOC_000932 NA non-coding upstream 1149056 1291175 ~ 1315753 (-)

Expression



Co-expression Network