CI01000037_01674415_01677266 (TBA1A, TUBA1A.S, TUBA8L4, TUBA1A, TUBA8L3, TBA, TUBA4A)


Basic Information

Item Value
gene id CI01000037_01674415_01677266
gene name TBA1A, TUBA1A.S, TUBA8L4, TUBA1A, TUBA8L3, TBA, TUBA4A
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 1674093 ~ 1677407 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU198758
ATTAAGACCAAACGCACCATCCAGTTTGTAGACTGGTGCCCTACTGGATTCAAAGTAGGTATCAACTATCAGCCTCCAACGGTGGTTCCTGGTGGAGATCTGGCCAAAGTACAGAGAGCCGTTTGCATGCTGAGCAACACTACAGCCATTGCTGAGGCCTGGGCTCGTCTAGACCACAAGTTTGACCTGATGTACGCCAAGAGAGCCTTTGTGCACTGGTATGTGGGAGAGGGAATGGAGGAAGGAGAGTTCTCAGAGGCCAGAGAAGACATGGCAGCTCTGGAGAAGGATTATGAAGAAGTCGGCACTGACAGCATGGGAGAGGAGGATGAAGAGGGAGAAGAATATTAAAGTCGGAATCAACGAAGTTCTACTTAGCTGCCCTGCAAAATAAAATCTGATCATTAAGATTTTTGCAAAAATAATTACTTGAAATTCCATTTGCATTACAGTTGGTTTCACATGAATAAAATTTGAAAAATAAAAGAAAGA
>CI01000037_01674415_01677266.mRNA
CTATAAAAACCCCACCTCTCCTTTCTTTTCCACATCTGCCTTCTCTTTTCCGAATCCTCAAGTCGGCCTGAAGGGAAATCTGACAAGATGGTAAGTCCTTAGTGCTTGATCAATTCTTAATTCTTATATTTTCATAAATAACTCAATTAAAATGCACATGTGTATTTTTTTTGACATCTTTTGCACTTAAGGCATGTTAGATTTCACTAAACTCTATGACACTGATAATTCTCTTACATGATTGTGTTATTTTTTGTGTCAAAGTTAGTTAAACTACCGAAAGACGTTTTTATGAATGTGATCAAGAGTGAAGCATTAAGCCATGCAAAGTTTCAGGCACAAAGCTGGCCTTTCATTATACAGAGGATGTGGCTACGGCCTTCAAAGCCTGATCCCAGACTATGACACACATCGTGAGTGTATTTCTATGCACGTTGGCCAAGCTGGGGCCCAAATGGGAAATGCATGCTGGGAGCTTTACTGCCTGGAGCACGGTATCCAGCCAGATGGACAGATGCCCAGTGATAAGACAATAGGAGGAGGAGACGATTCCTTCAACACCTTCTTCAGTGAGACAGGAGCAGGGAAACATGTTCCACGTGCCATCTTTGTTGATCTGGAACCCACTGTGATTGATGAGGTGCGCACAGGCACATATCGGCAGCTGTTCCATCCGGAGCAACTAATTACAGGCAAGGAAGATGCTGCCAATAACTATGCCCGCGGTCATTACACCATTGGTAAAGAGATCATTGACCTAGTGCTGGACAGAACTCGCAAACTGGCTGATCAGTGCACTGGCCTTCAAGGATTTCTCATCTTCCACAGCTTCGGTGGAGGTACTGGCTCTGGCTTCACCTCCCTGCTAATGGAGCGTCTCTCTGTCGACTATGGCAAGAAGTCCAAGCTTGAGTTTGCCATCTATCCTGCTCCTCAAGTGTCCACAGCGGTGGTGGAGCCCTACAACTCCATCCTGACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTGGACAACGAAGCCATCTATGACATCTGTCGTAAAAACCTGGACATCGAGCGTCCAACTTACACCAACCTCAACAGGCTCATTGGGCAGATCGTGTCCTCCATCACGGCCTCGCTGAGATTTGATGGAGCTCTGAATGTGGATCTCACCGAGTTCCAAACCAACCTGGTGCCCTACCCACGTATTCATTTCCCTCTGGCTACATACGCTCCAGTGATCTCTGCTGAAAAGGCGTATCATGAGCAGCTATCTGTGGCTGACATAACCAACGCCTGCTTTGAGCCGTCTAATCAGATGGTGAAATGTGATCCTCGACATGGTAAATACATGGCCTGCTGTCTTCTGTATCGTGGAGATGTGGTGCCCAAAGACGTCAATTCTGCCATAGCCGCCATTAAGACCAAACGCACAATCCAGTTTGTAGACTGGTGCCCTACTGGATTCAAAGTAGGTATCAACTATCAGCCTCCAACGGTGGTTCCTGGTGGAGATCTGGCCAAAGTACAGAGAGCCGTTTGCATGCTGAGCAACACTACAGCCATTGCTGAGGCCTGGGCTCGTCTAGACCACAAGTTTGACCTGATGTATGCCAAGAGAGCCTTTGTGCACTGGTATGTGGGAGAGGGAATGGAGGAAGGAGAGTTCTCAGAGGCCAGAGAAGACATGGCAGCTCTGGAGAAAGATTATGAAGAAGTCGGCACTGACAGCATGGGAGAGGAGGATGAAGAGGGAGAAGAATATTAAAGTCGGAATCAACGAAGTTCTACTTAGCTGCCCTGCAAA

Function

symbol description
tuba8l4 Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule.
tuba8l3 Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Acts upstream of or within glial cell development and myelination. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in brain; cranial ganglion; periventricular grey zone; and retinal inner nuclear layer.
tuba1a Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Acts upstream of or within negative regulation of apoptotic process and optic nerve formation. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Human ortholog(s) of this gene implicated in lissencephaly; lissencephaly 3; microcephaly; and visual epilepsy. Orthologous to human TUBA1A (tubulin alpha 1a).
tuba4a Enables protein kinase binding activity. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Located in microtubule. Implicated in amyotrophic lateral sclerosis type 22.

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
TU198758 True 198 TUCP 0.44 1 1677210 1677407
CI01000037_01674415_01677266.mRNA False 1801 mRNA 0.48 4 1674093 1677305

Neighbor

gene id symbol gene type direction distance location
CI01000037_01670886_01672687 TBA1A, TUBA1C, TUBA1B.L, TUBA8L3, TUBA4A, TUBA3E.L coding upstream 948 1670886 ~ 1673145 (+)
CI01000037_01098540_01104541 NA coding upstream 568907 1098072 ~ 1105186 (+)
CI01000037_01075201_01076456 NA coding upstream 597604 1073974 ~ 1076489 (+)
CI01000037_00987906_00988350 NA coding upstream 685721 987859 ~ 989246 (+)
CI01000037_00874555_00887437 NA coding upstream 786076 874487 ~ 888017 (+)
CI01000037_01685225_01686624 NA coding downstream 7920 1685225 ~ 1686738 (+)
CI01000037_01690717_01697406 DNAJB2 coding downstream 13412 1690717 ~ 1697794 (+)
CI01000037_01739245_01747048 DES, DESMA coding downstream 61843 1739148 ~ 1747380 (+)
CI01000037_01788114_01805399 BIN1 coding downstream 110809 1788114 ~ 1805405 (+)
CI01000037_01807429_01814912 NA coding downstream 130124 1807429 ~ 1815500 (+)
G174949 NA non-coding upstream 59942 1613876 ~ 1614274 (+)
G174916 NA non-coding upstream 103614 1569917 ~ 1570479 (+)
G174900 NA non-coding upstream 215441 1396347 ~ 1458652 (+)
G174828 NA non-coding upstream 389110 1241797 ~ 1284983 (+)
G174826 NA non-coding upstream 434894 1238903 ~ 1239199 (+)
G175003 NA non-coding downstream 74509 1751814 ~ 1755182 (+)
G175004 NA non-coding downstream 85489 1762794 ~ 1780869 (+)
G175641 NA non-coding downstream 354241 2031546 ~ 2060079 (+)
G175670 NA non-coding downstream 386867 2064172 ~ 2064536 (+)
G175674 NA non-coding downstream 396123 2073428 ~ 2073640 (+)
CI01000037_00228809_00230442 NA other upstream 1443697 228809 ~ 230730 (+)
CI01000037_01965864_01966433 COA5, CB064 other downstream 288437 1965603 ~ 1966435 (+)
G176346 NA other downstream 1162455 2839760 ~ 2840053 (+)
G176377 NA other downstream 1299557 2976862 ~ 3087968 (+)
CI01000037_04213179_04218057 NA other downstream 2535978 4212907 ~ 4218305 (+)

Expression


Co-expression Network