CI01000037_02527352_02576225 (TMTOPS2B)


Basic Information

Item Value
gene id CI01000037_02527352_02576225
gene name TMTOPS2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 2526102 ~ 2576704 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000037_02527352_02576225.mRNA
CTATTTAAACGCTGTCTCTGTCTCAAATGCATTTTTTCATGATCATGTGATTACTTTTTTTCACTGACACCAACGGAAATAAAAAGACTGACATGGTTTAAAAGCTGTTGCTGTCCAATCTTTCCCAATCAGAATGATGTCTTAAAATGCACATGCACTAAATTTCCCAGGGGGCATCGAACCCCCCAAGCAAACTCACTTTTTGGACATTGGTATTTCTAAAACCCTGTGTATGGCCATGCCTCTTTCTCATTCCCCTTTACATCGACAGCTATGTAAAATGGGTAAAAGCGTATCCATCTGGTAGTAATCTCTGCAGAAGGCTTTAGTCCCCAGTCAGCAATAGCCATTTAGAATGTGATTCTGATCCCTGACAATTTGAGCTCCCTGGGGGATGAAATATGTGAACAGATGTAGGGACTGCATGTGATATAATTGTATGCAAATACTTATTTTATTATTAGTTATGTACATAAAGTTGAAATAAAATTCTGTTTTTTCTGTTACTTGATTAATGTTTAAAGCACTAGACCTATTTAGATTTTACCACTCATGGTGCTGATACTGTGCACGTCAGTAATTGTTCATGGAAAGAGTTTAATTGACTTCAGTTCTGTTTTACCACCTGTATCATCATGGTGGCTAATATTTTAAGGTATAGAGCATAATTTAGTTGTTCAAGTAGGTTGGTGTGTTAGTCCGGTCTCTCTCTCGTGACGTCAAGATGCCTTTATATTACACGCCTGTTGCGCGTCCAGCAAAGCTCGCGCACTCGGCTGGAATACAGAACGACGCGTACCGATGCAGAGCTGGGACTGAGAAGGGAACGTTTTGCCTCTAGGATGCAATGCGTATAGACAAATGAAGTAGCACGTTATCGGACATCAAACGGTCAACATTAATTTACCACAATACGTTGCTGCGACACGTAGGCTACTGACCTTGTGAAAAACTAATAGTAGTTCAAAAAGTCAGATATATGTCATGGGTTCCTTAATGAGGAGTACTGTCTAACCGGTATTTAGATAGTCAGTTTGCTTGTCTCTTTTGAGCGTCAAGCGTTCAACAGTGCAAAGTGCTCTCAAAGGTGAAGCTCGCTGTCAAATGAGAATCATCATCATTATCATCTGTAGCCTACTAATTGAATCATGATGCTGATGCGCCGGAGTACGCTGAGGTGTTCATTGAAGGAGTCTTACCTTAAAAAATCCAGCACTGACTCATTATAACTTTTCTAACTATTCCTAAGGATGTTTTCCGAGCAGGCTGACTTAAACTACAGCTTTAACATGAGCGAAGAAGACCGGTTAACTCTTCTGGACGAGGACTGGAGCGACTCGCCGGTGGAGACGCTCTCTCGCGCGGGCTTCATCGCCCTGTCCGTGTTCCTGGGATTCATAATGACTTTCGGCTTTTTCAACAACTTTATTGTATTAGTTCTCTTCTGTAAGTTCAAGACGCTCCGGACGCCGGTTAACATGCTGCTTCTGAACATTAGCGTCAGTGACATGCTGGTGTGTATGTTCGGGACGACCCTGAGCTTCGCGTCCAGTGTGCGGGGACGGTGGCTGCTCGGACGGCACGGCTGCATGTGGTACGGCTTCATCAACTCCTGCTTCGAGACACTCTGGGTGGGCATAGAATTGAAATTCCACCGCGGTGGAAGTATGGATGGATGGAAACCTCCAGGCTGGTTTTGTCAAAGTGCATCCCAGGCAGGACGCACCATCCTGGGCACTCTAGACTTAGACAAAATAACACAGACCAGAGAACCAGGCAGTCAGAGCGAGGGTCTGGCATGCCTCAGGCCGGAGAGAGTGTGCCATCTTGGGCACCCTAGGGTCGAAAGACACCCTGGAGGAATTTCCTCCTCGAAAGTGCAAATTGGCAAAGTTTGGGTGAACCTCCATGCTCCCCGACCCATTCTCCCAGCCCGGCTAGGGTGGCTCGTTCCCGATCAAAGTCACATCTGTGCGCCTTATGGCTGGTGGTTCTTCTCTAACATTTCATGGCTTTCATGGCTATTACATCATTGTGAAAATGAGAGGCCATTTGTGCATGCAATTTTTCATTTTCCAGAGGACTTATCCCTGTGTCCATCAGTCAAGTGCTTATCGAGAGGTATCGTGTCTCTGATATCCTTGGTGGTTCTTTCTTACGACCGCTACAGCACATTGACGGTGTACCATAAACGTGGTCCAGACTATCGCAAACCTCTTTTGGCAGTAGGGGGTTCCTGGCTGTACTCTTTGATCTGGACAGTGCCCCCTCTTTTGGGCTGGAGTAGTTACGGGCTGGAGGGGGCGGGAACCAGCTGCTCTGTATCGTGGACCCAGCGCACGGCCCAGTCTCATGCTTACATCATCTGCCTGTTTATATTCTGCTTGGGCTTACCAGTGCTCATCATGGTCTATTGCTATGGAAGACTGCTCTATGCTGTCAAGCAGCTTACAGCTGGGCACACCTGGTTGTTTACGATGGGGAAGGAACACTGCGGTGACCACATCCTACCCAAATTGGAGGTAGGGAAGATACGCAGGACAGCAGCACGAAAACGGGAATACCATGTTTTGTTCATGGTTATCACCACCGTTGTGTGTTACCTCTTGTGCTGGATGCCGTATGGTGTTGTGGCCATGATGGCTACATTTGGCCGGCCAGGAATCATCTCACCCGTGGCCAGCGTGGTTCCCTCTCTCCTCGCCAAGAGCAGCACAGTCATCAACCCGCTAATATACATCCTGATGAACAAACAGGAAAACCGCACATTTGGCACAGTCCTCAGAATCATACTGTGCACATCTATGACACAACTTTGAGGTTCGCCAGTGAAATCACCTGCATTTCCTCAATCCTAAAGATCATATGCTCAAACAGAGCTAAACCTAGAGACCCAGCTCATGTTTCCCATTACAGGCTAAATCCTAACATTAAGGTATTTACCATGAATACTAACAAGCCCCGCTTTCTGTCACATGCTCCGAATTGTACGCCCCACCCCCCCACCCTCTTCCCCGAAAGTAGTCATATCACCCCATGACATTAAAAACCAAACAATTTACAGAAAAAAACTTCAATACTCTTAAAACGGCCATATCTCCCGTCACACCGTCTGAGAGACAGAGTTTATGCCGCTAAAACACCTTGTTAAAGGCTTAGGAAAAGACATTCACAGAGGAAGGACATACGACTTTGCCTCTGATCGTAGAGTCCTAAAAGACTAAAGAGAAAGTAGAAGGCAAAGTTTTAGTCCCTCTATAGGTCACATGACCATTTGGCCATCATGTAGAATTAAAAA

Function

symbol description
tmtops2b Enables photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; eye; gut; heart; and testis.

GO:

id name namespace
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG:

id description
K04256 OPN3; c-opsin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000037_02527352_02576225.mRNA True 3298 mRNA 0.46 7 2526102 2576704

Neighbor

gene id symbol gene type direction distance location
CI01000037_02414352_02418569 C6H2ORF40, ECRG4A coding upstream 107350 2414352 ~ 2418752 (+)
CI01000037_02405252_02406221 NA coding upstream 119665 2404783 ~ 2406437 (+)
CI01000037_02378066_02392175 NCK2A, NCK2 coding upstream 133231 2378066 ~ 2392871 (+)
CI01000037_02334480_02338932 NA coding upstream 187113 2331464 ~ 2338989 (+)
CI01000037_02282458_02287205 NA coding upstream 238817 2281347 ~ 2287285 (+)
CI01000037_02700254_02707760 GPR89B, GPR89, GPR89A, GPR89B.L coding downstream 122891 2699595 ~ 2708474 (+)
CI01000037_02755842_02769590 NA coding downstream 179138 2755842 ~ 2771166 (+)
CI01000037_02907711_02908412 NA coding downstream 330359 2907063 ~ 2908634 (+)
CI01000037_02909777_02910445 NA coding downstream 332896 2909600 ~ 2910489 (+)
CI01000037_02965392_02966406 FAM155A coding downstream 388688 2965392 ~ 2966433 (+)
G175777 NA non-coding upstream 112748 2412901 ~ 2413354 (+)
G175769 NA non-coding upstream 213391 2312207 ~ 2312711 (+)
G175767 NA non-coding upstream 222565 2302737 ~ 2303537 (+)
G175630 NA non-coding upstream 225752 2298327 ~ 2300350 (+)
G175628 NA non-coding upstream 230246 2144062 ~ 2295856 (+)
G175858 NA non-coding downstream 29674 2606378 ~ 2609995 (+)
G175871 NA non-coding downstream 48700 2625404 ~ 2626599 (+)
G175875 NA non-coding downstream 59391 2636095 ~ 2636309 (+)
G175877 NA non-coding downstream 69135 2645839 ~ 2646168 (+)
G175850 NA non-coding downstream 92802 2669506 ~ 2715511 (+)
CI01000037_01965864_01966433 COA5, CB064 other upstream 555711 1965603 ~ 1966435 (+)
G174949 NA other upstream 911828 1613876 ~ 1614274 (+)
CI01000037_00987906_00988350 NA other upstream 1536343 987859 ~ 989246 (+)
CI01000037_00228809_00230442 NA other upstream 2295706 228809 ~ 230730 (+)
G176346 NA other downstream 263056 2839760 ~ 2840053 (+)
G176377 NA other downstream 400158 2976862 ~ 3087968 (+)
CI01000037_04213179_04218057 NA other downstream 1636579 4212907 ~ 4218305 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037610 tmtops2b coding NC_007120.7 CM002893.2 6118362 ~ 6208067 (-)
bowfin (Amia calva) AMCG00014352 NA coding CM030128.1 CM030128.1 10229000 ~ 10242261 (+)