CI01000037_02755842_02769590


Basic Information

Item Value
gene id CI01000037_02755842_02769590
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 2755842 ~ 2771166 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000037_02755842_02769590.mRNA
AAATGGATTCACTGCGCATACTGCTATACTCTCTCATATTCCTGCTGAGCGTGTTTGGTAATCTGCTCATCATTGTGGTTTTGGTGGTAAATAAGCGAATGCGGACGGTGACCAACTCATTCCTGCTCTCCCTGGCCATTAGTGATCTTATGATGGCTGTTGTCTGCATGCCCTTCACTCTTATTCCCAACCTGCTGGAGGATTTCATCTTTGGAGCTGCCATGTGCAAGATTGTGGCCTATCTTATGGGAATTTCTGTGTGCATATCTACCTTCAGTCTTGTGGCTATAGCCATTGAGAGGTACAGTGCCATTTGCAACCCGCTGAAGTCACGGGCATGGCAGACCCGATCCCACGCCTACAAAGTCATTGCTTCCACCTGGGTCCTGTCCTTCCTTATTATGACACCTTATCCCATCTTCAGCACCCTGGTGCAGTTCACCAAATCCAACAACATCACAGCTCACATGTGCCGCCATGACTGGCCAAAGAGCGAGGTGGAGCAAGCGTGGTGCATCCTGTTGCTATTTGTTCTGTTCTTCATTCCTGGAGTAGTGATGATCATCGCTTACGGGCTCATATCTCGAGAGCTCTACCGTGGAATACAGTTCGAATTGGAACAGAAGAAGGGACAATGCGGAATGAAAAATGGTATCAGCGGCACTGTCTTATGTAGCACCGATGACGGAGATGGCTGCTACATCCAGGTGTCCAAGAGGCCCAACTCCATGGAGATGTCAGCCCTCACCCCAACTGGCTCCGCAAAGGTGGACCGACCCCGCAGCAACACCTCCGAGGCTAAACTGATGGCAAAGAAGCGCGTGATCCGTATGCTCATTGTCATCGTGGCCATGTTCTTCATCTGCTGGATGCCCCTGTACTCCGTTAACACCTGGAAAGCATTCGACCTTCGCTCGGCCCACGAGGCTCTCTCTGGAGCCCCCATCTCTTTCATCCACCTGCTGTCCTACACATCTGCCTGCGTCAACCCCATCATCTACTGCTTTATGAACAAGCGTTTTCGAAAGGCGCTTCTCACCACTTTCTCTTGCTGCTGCTGGCCCTGCCGTAGAAGAGGCTTCAGGGAAGGTGATGATGAGGTCACTGCCACCGGAGCGTCCATGTCTAAATTCAACTACACCACTGTCAGCACAATGGGACCATGCTGATTCTCAGAGACCAAGGCTGGGAAAGATGGAGGAGAATTGGGGTTGATGTTGACATATTGTCAAGGTTCACACTATGGTAGAACGGAGTAGCTGTATTCAACTGAACACCCTTAGATTGTTCATCACCTACTCGCAACCAAGCAAACCACATGCTACATCATCATCGGTCATTGTTTTATGATCCATGATTGCTCATGGTGTTACATATTCACTATAGACTTGTATAAATGTATATACTTAAGGTGGCGTCCCACAAGCTGACCTAAAACAACTCGGTAGGAGAGGTTACACCAACCTCATCCTCTTCTGTTGAAGGTCCATTACTCTCACTCATTAAGAATGCAAATGAAAGACTAAATGACTAAACATTTCTTTCTGACTGAATTAGGATGTCATTTTGGTGTAGCAGAACCCAAGAAAAACATTTATTTATACAATCACTATAAATCAGTGTTTGATGCATGTGGCTTAGAGTTTGCTGAGGAGATGTTTGGATCAGATGCAAGCCTGGCAGCGGTTCTTCAGGATGAGAAGAAGCCTATTGGTTGGCCTTATCGTGATAATGATAATGTCAAAAATGCTATTGTTAGAGTCAACTATACCATGATCTCAGCAGGAAGCAGAGTTTCTGGAGCTGTTAGCGTTTACTGAGAGACGGCTACATGCACTGATGTCCTTTGATTCTCATACAACTATGTAAATGACTGAAAATAGCTAGTGGAATGCCAGCCTTAAACATTTTATGTTAAGTTATCCTTTTGTTGTTGTTTTAAGTGCCTGCAATCCGTTCAGAAGTCAAGGTTTTCTTCGGAGTAGTTGTTGCATAATGTAAAAGATTTCACTTATGAGAAATGATCAGAACTCTTGAACACTGACATGTTGCAACGCCTCTCCAAAGTCTGAGCCAACAGGCTTGCAGTATAAGTCACAATTCTACTGTATTACAAATACCTAATGCGCTGGTTAATGATGATAGTCTGTTGCTAGACAAGACAATGCTTTTGGCAATTGGTTTCATCCCATTTTTTGGAGCCAAAGAGGTTTTGTTTTTGAAGATGTCCTTCATGGCCCTCACAATCTGTGACTTGAGTGGCGGTAAATGCAGGTCACCTCAACTGAATGAGTACTCATGCCGAGCTGTCATAATCTCACAGACTGATTTATGGCTGCTTTTACATGTCCTCATAAATTTTATAGACATAAACTTATTAAGGTCCTCTCAGATGGTCCTCATCAAATAAGATCATTCAAACCTGATTTGCGATTGTTCCATTTCTCCTTCTTTAAAAGAGAAAAAAAAAAGAACATGTTTTTGAAGCAGTTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGCTTGATTAAATGTCAGATATTTTTGACTGCCATGGGACTCATGGGAGGTGAGACTTGAGTCAGTCACTGTAAAAATTGTCAAGCCACTAAAATTGAAAACATCAATTTGATTGCTGACTTTAAGCAAAATTAAAGTGCTGCCAAAGTGACAACCTGTAGTGATAAGTTCATTGCACTTTCTCAGCCACTTTGATTTTAATTACTGATGAAA

Function

NR:

description
Si:ch211-159j13.2 protein

GO: NA

KEGG:

id description
K04194 CCKAR; cholecystokinin A receptor

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000037_02755842_02769590.mRNA True 2745 mRNA 0.44 4 2755842 2771166

Neighbor

gene id symbol gene type direction distance location
CI01000037_02700254_02707760 GPR89B, GPR89, GPR89A, GPR89B.L coding upstream 47368 2699595 ~ 2708474 (+)
CI01000037_02527352_02576225 TMTOPS2B coding upstream 179138 2526102 ~ 2576704 (+)
CI01000037_02414352_02418569 C6H2ORF40, ECRG4A coding upstream 337090 2414352 ~ 2418752 (+)
CI01000037_02405252_02406221 NA coding upstream 349405 2404783 ~ 2406437 (+)
CI01000037_02378066_02392175 NCK2A, NCK2 coding upstream 362971 2378066 ~ 2392871 (+)
CI01000037_02907711_02908412 NA coding downstream 135897 2907063 ~ 2908634 (+)
CI01000037_02909777_02910445 NA coding downstream 138434 2909600 ~ 2910489 (+)
CI01000037_02965392_02966406 FAM155A coding downstream 194226 2965392 ~ 2966433 (+)
CI01000037_03102630_03108094 NA coding downstream 331464 3102630 ~ 3109016 (+)
CI01000037_03120937_03121997 ABHD13 coding downstream 349771 3120937 ~ 3122022 (+)
G175849 NA non-coding upstream 34872 2715672 ~ 2720970 (+)
G175850 NA non-coding upstream 40331 2669506 ~ 2715511 (+)
G175887 NA non-coding upstream 64753 2690351 ~ 2691089 (+)
G175877 NA non-coding upstream 109674 2645839 ~ 2646168 (+)
G175875 NA non-coding upstream 119533 2636095 ~ 2636309 (+)
G176273 NA non-coding downstream 15695 2786861 ~ 2787562 (+)
G176292 NA non-coding downstream 26235 2797401 ~ 2798084 (+)
G176294 NA non-coding downstream 27046 2798212 ~ 2798493 (+)
G176297 NA non-coding downstream 28143 2799309 ~ 2799606 (+)
G176303 NA non-coding downstream 34157 2805323 ~ 2805550 (+)
CI01000037_01965864_01966433 COA5, CB064 other upstream 785451 1965603 ~ 1966435 (+)
G174949 NA other upstream 1141568 1613876 ~ 1614274 (+)
CI01000037_00987906_00988350 NA other upstream 1766083 987859 ~ 989246 (+)
CI01000037_00228809_00230442 NA other upstream 2525446 228809 ~ 230730 (+)
G176346 NA other downstream 68594 2839760 ~ 2840053 (+)
G176377 NA other downstream 205696 2976862 ~ 3087968 (+)
CI01000037_04213179_04218057 NA other downstream 1442117 4212907 ~ 4218305 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037608 CCKBR coding NC_007120.7 CM002893.2 5776359 ~ 5805229 (-)
bowfin (Amia calva) AMCG00014350 NA coding CM030128.1 CM030128.1 10352845 ~ 10380421 (+)