XLOC_000909 (pcid2)


Basic Information

Item Value
gene id XLOC_000909
gene name pcid2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 152007 ~ 157563 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001440
GCTGCGTGCGCTCAGATGTAAACAGGAAGTGACGTCGGTGGCGTTTGGAGGAAAGAAGCACGCGCGCGAAGTGATGTGAATTAATGTTGGTAGGCATTTCTCAGTGCTATAGACCCTCACTTCAGAGATCAGGAAATGGCTCATATCACTCTGAACCAGTACCTGCAGCAGGTTCTGGAGGCCATAGACAGCAGAGACGGCTCCTTCTGCGCAGAGATGCTGTCCTTCAAGCATCCACACGTGGCCAACCCTCGCCTGCAGttgTCCAGTCCAGAGGAGAAGTGTCAGCAGCTGCTGGAGCCGCCGTATGATGAGATGGTGGCCGCTCATCTCAGATGTACGTTCGCGGTGTCCAACCATGACTTTGTGGAGGCCTACAAATGCCAGACGGTGGTAGTTCAATCATTTCTGAAGGCGTTTCAGGCTCATAAAGAGGAGAACTGGGCACTGCCCATCATGTTCGCCGTGACCCTTGACCTCAGGATATTCGCCAATAATgcGGAGCAGCAGCTGCAGCAGAAGGGCAAAGGGAAGGTTGGAGATATGCTGGAGAAAGCGGCGGAGCAGCTAATGAGCTGCTTCAGAGTGTGTGCCAGCGACAAtcgcGCTGGGATTGACGACTCGAAGAAATGGGGAATGTTGTTCCTCATCAATCAGCTCTTCAAGATCTATTTCAAAatcaaTAAGCTGCACCTGTGTAAGCCGCTCATCCGCGCCATCGACAGCTCCAACCTGAAGGACGAGTACACCATGGCTCAGCGCGTCACCTACAAATACTACGTGGGCAGGAAGGCCATGTTCGACAGCGACTTCAAACCAGctgagGAGTGTCTGTCGTTCTCCTTTACCCACTGCCATCGCTCCTGCCAGAGGAACAAGCGGCTGATCCTCATCTACCTGCTGCCCGTTAAGATGCTGCTGGGTCACATGCCCACACACCAGCTACTGAAGAAATATGACCTCATGCAGTTTGCTGATGTCACTAAAGCTGtcagtgagggGAATCTGCTGCTGCTGAACGCCGCTCTGGTCAAACACGAGACGTTCTTCATCCGCTGCGGGATCTTCCTCATCCTGGAGAAGCTGAAGATCATCACCTACAGAAACCTCTTCAAGAAAGTGTATCATCTCCTGAGGACTCATCAGCTTCCTCTGGCTGCATTTCTGGTGTCGCTGCAGATGATGAAGGTGGAGGACGTGGACATCGACGAGGTGCAGTGCATTCTGGCCAACCTCATCTACatgGGTCACATTAAGGGCTATATTTCCCATCAGCACCAGAAGCTGGTGGTCAGCAAGCAGAATCCCTTCCCTCCGCTGTCCAGCATCTCCTGAACTCCATCTCCCAGAATGCACCATCACAGACACACTGATCCTCAGAGCTTCGGTCTTATATTCTTCTGAATATTGTTAGATAAACATCACACTGttttgtacattttctttttttaattactgaTCAATCATTTATAAATTCAGCCTAAAATCATTAGAATggcaatattttaattatattgcattaaacaatatattattttatacatgaCTCACATTTAATCCAGATTTGTACACATTACGGATGTTGAATCTTACAGGAATAACATGTTTAATGAACATTATGtcacataaaaaagaaagaaagta
>TCONS_00001441
ATGGCTCATATCACTCTGAACCAGTACCTGCAGCAGGTTCTGGAGGCCATAGACAGCAGAGACGGCTCCTTCTGCGCAGAGATGCTGTCCTTCAAGCATCCACACGTGGCCAACCCTCGCCTGCAGttgTCCAGTCCAGAGGAGAAGTGTCAGCAGCTGCTGGAGCCGCCGTATGATGAGATGGTGGCCGCTCATCTCAGATGTACGTTCGCGGTGTCCAACCATGACTTTGTGGAGGCCTACAAATGCCAGACGGTGGTAGTTCAATCATTTCTGAAGGCGTTTCAGGCTCATAAAGAGGAGAACTGGGCACTGCCCATCATGTTCGCCGTGACCCTTGACCTCAGGATATTCGCCAATAATgcGGAGCAGCAGCTGCAGCAGAAGGGCAAAGGGAAGGTTGGAGATATGCTGGAGAAAGCGGCGGAGCAGCTAATGAGCTGCTTCAGAGTGTGTGCCAGCGACAAtcgcGCTGGGATTGACGACTCGAAGAAATGGGGAATGTTGTTCCTCATCAATCAGCTCTTCAAGATCTATTTCAAAatcaaTAAGCTGCACCTGTGTAAGCCGCTCATCCGCGCCATCGACAGCTCCAACCTGAAGGACGAGTACACCATGGCTCAGCGCGTCACCTACAAATACTACGTGGGCAGGAAGGCCATGTTCGACAGCGACTTCAAACCAGctgagGAGTGTCTGTCGTTCTCCTTTACCCACTGCCATCGCTCCTGCCAGAGGAACAAGCGGCTGATCCTCATCTACCTGCTGCCCGTTAAGATGCTGCTGGGTCACATGCCCACACACCAGCTACTGAAGAAATATGACCTCATGCAGTTTGCTGATGTCACTAAAGCTGtcagtgagggGAATCTGCTGCTGCTGAACGCCGCTCTGGTCAAACACGAGACGTTCTTCATCCGCTGCGGGATCTTCCTCATCCTGGAGAAGCTGAAGATCATCACCTACAGAAACCTCTTCAAGAAAGTGTATCATCTCCTGAGGACTCATCAGCTTCCTCTGGCTGCATTTCTGGTGTCGCTGCAGATGATGAAGGTGGAGGACGTGGACATCGACGAGGTGCAGTGCATTCTGGCCAACCTCATCTACatgGGTCACATTAAGGGCTATATTTCCCATCAGCACCAGAAGCTGGTGGTCAGCAAGCAGAATCCCTTCCCTCCGCTGTCCAGCATCTCCTGA
>TCONS_00001442
ACACCATGGCTCAGCGCGTCACCTACAAATACTACGTGGGCAGGAAGGCCATGTTCGACAGCGACTTCAAACCAGctgagGAGTGTCTGTCGTTCTCCTTTACCCACTGCCATCGCTCCTGCCAGAGGAACAAGCGGCTGATCCTCATCTACCTGCTGCCCGTTAAGATGCTGCTGATAATCAGCAATTATCCAATCTAAATGTGATTGTGTAAACGTGATCTGTTGCGCAACAGTGTAAGtgacagtagtgtgtgtgtgtgtgtgtgtgtgtgtg
>TCONS_00003287
GCTCAGATGTAAACAGGAAGTGACGTCGGTGGCGTTTGGAGGAAAGAAGCACGCGCGCGAAGTGATGTGAATTAATGTTGGTAGGCATTTCTCAGTGCTATAGACCCTCACTTCAGAGATCAGGAAATGGCTCATATCACTCTGAACCAGTACCTGCAGCAGGTTCTGGAGGCCATAGACAGCAGAGACGGCTCCTTCTGCGCAGAGATGCTGTCCTTCAAGCATCCACACGTGGCCAACCCTCGCCTGCAGttgTCCAGTCCAGAGGAGAAGTGTCAGCAGCTGCTGGAGCCGCCGTATGATGAGATGGTGGCCGCTCATCTCAGATGTACGTTCGCGGTGTCCAACCATGACTTTGTGGAGGCCTACAAATGCCAGACGGTGGTAGTTCAATCATTTCTGAAGGCGTTTCAGGCTCATAAAGAGGAGAACTGGGCACTGCCCATCATGTTCGCCGTGACCCTTGACCTCAGGATATTCGCCAATAATgcGGAGCAGCAGCTGCAGCAGAAGGGCAAAGGGAAGGTTGGAGATATGCTGGAGAAAGCGGCGGAGCAGCTAATGAGCTGCTTCAGAGTGTGTGCCAGCGACAAtcgcGCTGGGATTGACGACTCGAAGAAATGGGGAATGTTGTTCCTCATCAATCAGCTCTTCAAGATCTATTTCAAAatcaaTAAGCTGCACCTGTGTAAGCCGCTCATCCGCGCCATCGACAGCTCCAACCTGAAGGACGAGTACACCATGGCTCAGCGCGTCACCTACAAATACTACGTGGGCAGGAAGGCCATGTTCGACAGCGACTTCAAACCAGctgagGAGTGTCTGTCGTTCTCCTTTACCCACTGCCATCGCTCCTGCCAGAGGAACAAGCGGCTGATCCTCATCTACCTGCTGCCCGTTAAGATGCTGCTGATAATCAGCAATTATCCAATCTAAATGTGATTGTGTAAACGTGATCTGTTGCGCAACAGTGTAAGtgacagtagtgtgtgtgtgtgtgtgtgtgtgtgtg
>TCONS_00001443
GCTCAGATGTAAACAGGAAGTGACGTCGGTGGCGTTTGGAGGAAAGAAGCACGCGCGCGAAGTGATGTGAATTAATGTTGGTAGGCATTTCTCAGTGCTATAGACCCTCACTTCAGAGATCAGGAAATGGCTCATATCACTCTGAACCAGTACCTGCAGCAGGTTCTGGAGGCCATAGACAGCAGAGACGGCTCCTTCTGCGCAGAGATGCTGTCCTTCAAGCATCCACACGTGGCCAACCCTCGCCTGCAGttgTCCAGTCCAGAGGAGAAGTGTCAGCAGCTGCTGGAGCCGCCGTATGATGAGATGGTGGCCGCTCATCTCAGATGTACGTTCGCGGTGTCCAACCATGACTTTGTGGAGGCCTACAAATGCCAGACGGTGGTAGTTCAATCATTTCTGAAGGCGTTTCAGGCTCATAAAGAGGAGAACTGGGCACTGCCCATCATGTTCGCCGTGACCCTTGACCTCAGGATATTCGCCAATAATgcGGAGCAGCAGCTGCAGCAGAAGGGCAAAGGGAAGGTTGGAGATATGCTGGAGAAAGCGGCGGAGCAGCTAATGAGCTGCTTCAGAGTGTGTGCCAGCGACAAtcgcGCTGGGATTGACGACTCGAAGAAATGGGGAATGTTGTTCCTCATCAATCAGCTCTTCAAGATCTATTTCAAAatcaaTAAGCTGCACCTGTGTAAGCCGCTCATCCGCGCCATCGACAGCTCCAACCTGAAGGACGAGTACACCATGGCTCAGCGCGTCACCTACAAATACTACGTGGGCAGGAAGGCCATGTTCGACAGCGACTTCAAACCAGGTCTGACCACATGAGGATGAGGATGGCCATTATGGTGGAAGCTTGGTGATGATGATTGTTATGGTGATAattatgatgaagatgatgaataATTTGGTTGTCATGTTGATGGTATGTGATGATGATGAG
>TCONS_00001444
CTGAACATCATTTCTGAAGGCGTTTCAGGCTCATAAAGAGGAGAACTGGGCACTGCCCATCATGTTCGCCGTGACCCTTGACCTCAGGATATTCGCCAATAATgcGGAGCAGCAGCTGCAGCAGAAGGGCAAAGGGAAGGTTGGAGATATGCTGGAGAAAGCGGCGGAGCAGCTAATGAGCTGCTTCAGAGTGTGTGCCAGCGACAAtcgcGCTGGGATTGACGACTCGAAGAAATGGGGAATGTTGTTCCTCATCAATCAGCTCTTCAAGATCTATTTCAAA
>TCONS_00003288
CGTCGGTGGCGTTTGGAGGAAAGAAGCACGCGCGCGAAGTGATGTGAATTAATGTTGGGCATTTCTCAGTGCTATAGACCCTCACTTCAGAGATCAGGAAATGGCTCATATCACTCTGAACCAGTACCTGCAGCAGGTTCTGGAGGCCATAGACAGCAGAGACGGCTCCTTCTGCGCAGAGATGCTGTCCTTCAAGCATCCACACGTGGCCAACCCTCGCCTGCAGGTGTTTCAATACATTATTACTAGTTAATACACACTGCTTAGGCTACTAGAGAACTGCACCACAGGCTTTCTGCTGCTGCATGCCCTCAAATATCAGCTTCCTCGTGCAAAGGGCTCTTGCATTAAgagttattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacagttgTCCAGTCCAGAGGAGAAGTGTCAGCAGCTGCTGGAGCCGCCGTATGATGAGATGGTGGCCGCTCATCTCAGATGTACGTTCGCGGTGTCCAACCATGACTTTGTGGAGGCCTACAAATGCCAGACGGTGGTAGTTCAATCATTTCTGAAGGCGTTTCAGGCTCATAAAGAGGAGAACTGGGCACTGCCCATCATGTTCGCCGTGACCCTTGACCTCAGGATATTCGCCAATAATgcGGAGCAGCAGCTGCAGCAGAAGGGCAAAGGGAAGGTTGGAGATATGCTGGAGAAAGCGGCGGAGCAGCTAATGAGCTGCTTCAGAGTGTGTGCCAGCGACAAtcgcGCTGGGATTGACGACTCGAAGAAATGGGGAATGTTGTTCCTCATCAATCAGCTCTTCAAGATCTATTTCAAA
>TCONS_00001445
CGTCGGTGGCGTTTGGAGGAAAGAAGCACGCGCGCGAAGTGATGTGAATTAATGTTGGGCATTTCTCAGTGCTATAGACCCTCACTTCAGAGATCAGGAAATGGCTCATATCACTCTGAACCAGTACCTGCAGCAGGTTCTGGAGGCCATAGACAGCAGAGACGGCTCCTTCTGCGCAGAGATGCTGTCCTTCAAGCATCCACACGTGGCCAACCCTCGCCTGCAGGTGTTTCAATACATTATTACTAGTTAATACACACTGCTTAGGCTACTAGAGAACTGCACCACAGGCTTTCTGCTGCTGCATGCCCTCAAATATCAGCTTCCTCGTGCAAAGGGCTCTTGCATTAAgagttattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacagttgTCCAGTCCAGAGGAGAAGTGTCAGCAGCTGCTGGAGCCGCCGTATGATGAGATGGTGGCCGCTCATCTCAGATGTACGTTCGCGGTGTCCAACCATGACTTTGTGGAGGCCTACAAATGCCAGACGGTGGTAGTTCAATCATTTCTGAAGGCGTTTCAGGCTCATAAAGAGGAGAACTGGGCACTGCCCATCATGTTCGCCGTGACCCTTGACCTCAGGATATTCGC
>TCONS_00001446
GACGTCGGTGGCGTTTGGAGGAAAGAAGCACGCGCGCGAAGTGATGTGAATTAATGTTGGTAGGCATTTCTCAGTGCTATAGACCCTCACTTCAGAGATCAGGAAATGGCTCATATCACTCTGAACCAGTACCTGCAGCAGGTTCTGGAGGCCATAGACAGCAGAGACGGCTCCTTCTGCGCAGAGATGCTGTCCTTCAAGCATCCACACGTGGCCAACCCTCGCCTGCAGttgTCCAGTCCAGAGGAGAAGTGTCAGCAGCTGCTGGAGCCGCCGTATGATGAGATGGTGGCCGCTCATCTCAGGTGTGTGTGCTGCATCAGTCTGCAGTGCTGTGTTCACTGCATGTTTACTGCATGTTCATTGCATATTTACTGCATGTTTACTGCATCGTTCACTGCATGTTTATTGCATGTT

Function

symbol description
pcid2 Predicted to enable RNA binding activity and double-stranded DNA binding activity. Predicted to be involved in RNA metabolic process; poly(A)+ mRNA export from nucleus; and posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery. Predicted to be part of transcription export complex 2. Orthologous to human PCID2 (PCI domain containing 2).

GO:

id name namespace
GO:0071033 nuclear retention of pre-mRNA at the site of transcription biological_process
GO:0006368 transcription elongation from RNA polymerase II promoter biological_process
GO:0000973 posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery biological_process
GO:0016973 poly(A)+ mRNA export from nucleus biological_process
GO:0070390 transcription export complex 2 cellular_component
GO:0003690 double-stranded DNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-041114-79 Predicted to enable RNA binding activity and double-stranded DNA binding activity. Predicted to be involved in RNA metabolic process; poly(A)+ mRNA export from nucleus; and posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery. Predicted to be part of transcription export complex 2. Orthologous to human PCID2 (PCI domain containing 2).

Ensembl:

ensembl_id ENSDARG00000013802

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001440 False 1644 mRNA 0.48 15 152007 157563
TCONS_00001441 False 1200 mRNA 0.53 14 152316 156375
TCONS_00001442 False 276 processed_transcript 0.50 3 153238 153846
TCONS_00003287 False 1012 lncRNA 0.52 12 153238 157554
TCONS_00001443 False 940 lncRNA 0.51 10 153643 157554
TCONS_00001444 False 283 lncRNA 0.51 4 154086 154808
TCONS_00003288 False 847 lncRNA 0.51 8 154086 157531
TCONS_00001445 False 660 lncRNA 0.51 6 154613 157531
TCONS_00001446 True 417 lncRNA 0.51 4 155770 157533

Neighbor

gene id symbol gene type direction distance location
XLOC_000907 FP067451.1 coding downstream 4161 108285 ~ 147846 (-)
XLOC_000908 NA coding downstream 9888 141289 ~ 142119 (-)
XLOC_000906 gpa33a coding downstream 80484 65705 ~ 71523 (-)
XLOC_000905 si:zfos-1011f11.2 coding downstream 86990 60979 ~ 65017 (-)
XLOC_000904 ildr1a coding downstream 101760 44839 ~ 50247 (-)
XLOC_000910 FO681286.1 coding upstream 2739 160302 ~ 206208 (-)
XLOC_000911 grtp1a coding upstream 27352 184915 ~ 192033 (-)
XLOC_000912 dcun1d2b coding upstream 50618 208181 ~ 214911 (-)
XLOC_000913 gas6 coding upstream 155221 312784 ~ 338445 (-)
XLOC_000914 pros1 coding upstream 185729 343292 ~ 354166 (-)
XLOC_000927 NA non-coding upstream 621012 778575 ~ 779614 (-)
XLOC_000929 NA non-coding upstream 848374 1005937 ~ 1014866 (-)
XLOC_000930 CU611053.1 non-coding upstream 893378 1050941 ~ 1051057 (-)
XLOC_000931 NA non-coding upstream 986399 1143962 ~ 1253194 (-)
XLOC_000932 NA non-coding upstream 1133612 1291175 ~ 1315753 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location