Gene
RNA
| Item | Value |
|---|---|
| gene id | G174675 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000037 |
| NCBI id | null |
| chromosome length | 4612320 |
| location | 849889 ~ 851482 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU198403 | True | 1566 | lncRNA | 0.37 | 2 | 849889 | 851482 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000037_00808744_00809273 | NA | coding | upstream | 40016 | 808744 ~ 809873 (+) |
| CI01000037_00796721_00807196 | NA | coding | upstream | 42555 | 795352 ~ 807334 (+) |
| CI01000037_00784200_00785176 | NA | coding | upstream | 64713 | 783585 ~ 785176 (+) |
| CI01000037_00775538_00779866 | NA | coding | upstream | 69802 | 775538 ~ 780087 (+) |
| CI01000037_00729466_00733346 | NA | coding | upstream | 115779 | 729017 ~ 734110 (+) |
| CI01000037_00874555_00887437 | NA | coding | downstream | 23005 | 874487 ~ 888017 (+) |
| CI01000037_00987906_00988350 | NA | coding | downstream | 136424 | 987859 ~ 989246 (+) |
| CI01000037_01075201_01076456 | NA | coding | downstream | 222492 | 1073974 ~ 1076489 (+) |
| CI01000037_01098540_01104541 | NA | coding | downstream | 246590 | 1098072 ~ 1105186 (+) |
| CI01000037_01670886_01672687 | TBA1A, TUBA1C, TUBA1B.L, TUBA8L3, TUBA4A, TUBA3E.L | coding | downstream | 819404 | 1670886 ~ 1673145 (+) |
| G174674 | NA | non-coding | upstream | 1246 | 848305 ~ 848643 (+) |
| G174673 | NA | non-coding | upstream | 16038 | 833405 ~ 833851 (+) |
| G174672 | NA | non-coding | upstream | 16813 | 832438 ~ 833076 (+) |
| G174671 | NA | non-coding | upstream | 18026 | 830730 ~ 831863 (+) |
| G174670 | NA | non-coding | upstream | 20546 | 829073 ~ 829343 (+) |
| G174676 | NA | non-coding | downstream | 662 | 852144 ~ 852406 (+) |
| G174709 | NA | non-coding | downstream | 122491 | 973973 ~ 974288 (+) |
| G174712 | NA | non-coding | downstream | 130219 | 981701 ~ 981992 (+) |
| G174731 | NA | non-coding | downstream | 170960 | 1022442 ~ 1023487 (+) |
| G174742 | NA | non-coding | downstream | 183968 | 1035450 ~ 1035773 (+) |
| CI01000037_00228809_00230442 | NA | other | upstream | 619493 | 228809 ~ 230730 (+) |
| G174949 | NA | other | downstream | 762394 | 1613876 ~ 1614274 (+) |
| CI01000037_01965864_01966433 | COA5, CB064 | other | downstream | 1114260 | 1965603 ~ 1966435 (+) |
| G176346 | NA | other | downstream | 1988278 | 2839760 ~ 2840053 (+) |
