G174949


Basic Information

Item Value
gene id G174949
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 1613876 ~ 1614274 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU198741
TCCACAGTCAGTGATGGTTTGGGGTGCCATGTCATCTGCTGGTGTTGGTCCACTGTGTTTTCTGAGGTCCAAGGTCAATGCAGCCGTATACCAGGAAGTTTTAGAGCACTTCATGCTTCCTGCTGCTGACCAACTTTATGGAGATGCAGATTTCATTTTCCAACAGGACTTGGCACCTGCACACAGTGCCAAAGCTACCAGTACCTGGTTTAAGGACCATGGTATCCCTGTTCTTAAATGGCCAGCAAACTTGCCTGACCTTAACCCCATAGAAAATCTATGGGGTATTGTGAAGAGGAAGATGCGATATGCCAGACCCAACAATGCAGAAGAGCTGAAGGCCACTATCAGAGCAACCTGGGCTCTTATAACACCTGAGCAGTGCCACAGACTGATCGA
>TU198743
TCCACAGTCAGTGATGGTTTGGGGTGCCATGTCATCTGCTGGTGTTGGTCCACTGTGTTTTCTGAGGTCCAAGGTCAATGCAGCCGTATACCAGGAAGTTTTAGAGCACTTCATGCTTCCTGCTGCTGACCAACTTTATGGAGATGCAGATTTCATTTTCCAACAGGACTTGGCACCTGCACACAGTGCCAAAGCTACCAGTACCTGGTTTAAGGACCATGGTATCCCTGTTCTTAAATGGCCAGCAAACTTGCCTGACCTTAACCCCATAGAAAA
>TU198740
TGGTTTGGGGTGCCATGTCATCTGCTGGTGTTGGTCCACTGTGTTTTCTGAGGTCCAAGGTCAATGCAGCCGTATACCAGGAAGTTTTAGAGCACTTCATGCTTCCTGCTGCTGACCAACTTTATGGAGATGCAGATTTCATTTTCCAACAGGACTTGGCACCTGCACACAGTGCCAAAGCTACCAGTACCTGGTTTAAGGACCATGGTATCCCTGTTCTTAAATGGCCAGCAAACTTGCCTGACCTTAACCCCATAGAAAATCTATGGGGTATTGTGAAGAGGAAGATGCGATATGCCAGACCCAACAATGCAGAAGAGCTGAAGGCCACTATCAGAGCAACCTGGGCTCTTATAACACCTGAGCAGTGCCACAGACTGATCGA
>TU198742
TGGTTTGGGGTGCCATGTCATCTGCTGGTGTTGGTCCACTGTGTTTTCTGAGGTCCAAGGTCAATGCAGCCGTATACCAGGAAGTTTTAGAGCACTTCATGCTTCCTGCTGCTGACCAACTTTATGGAGATGCAGATTTCATTTTCCAACAGGACTTGGCACCTGCACACAGTGCCAAAGCTACCAGTACCTGGTTTAAGGACCATGGTATCCCTGTTCTTAAATGGCCAGCAAACTTGCCTGACCTTAACCCCATAGAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198741 False 399 TUCP 0.48 1 1613876 1614274
TU198743 False 276 lncRNA 0.48 1 1613876 1614151
TU198740 False 385 TUCP 0.48 1 1613890 1614274
TU198742 True 262 lncRNA 0.48 1 1613890 1614151

Neighbor

gene id symbol gene type direction distance location
CI01000037_01098540_01104541 NA coding upstream 508690 1098072 ~ 1105186 (+)
CI01000037_01075201_01076456 NA coding upstream 537387 1073974 ~ 1076489 (+)
CI01000037_00987906_00988350 NA coding upstream 625504 987859 ~ 989246 (+)
CI01000037_00874555_00887437 NA coding upstream 725859 874487 ~ 888017 (+)
CI01000037_00808744_00809273 NA coding upstream 804003 808744 ~ 809873 (+)
CI01000037_01670886_01672687 TBA1A, TUBA1C, TUBA1B.L, TUBA8L3, TUBA4A, TUBA3E.L coding downstream 56735 1670886 ~ 1673145 (+)
CI01000037_01674415_01677266 TBA1A, TUBA1A.S, TUBA8L4, TUBA1A, TUBA8L3, TBA, TUBA4A coding downstream 59942 1674093 ~ 1677407 (+)
CI01000037_01685225_01686624 NA coding downstream 71074 1685225 ~ 1686738 (+)
CI01000037_01690717_01697406 DNAJB2 coding downstream 76566 1690717 ~ 1697794 (+)
CI01000037_01739245_01747048 DES, DESMA coding downstream 124997 1739148 ~ 1747380 (+)
G174916 NA non-coding upstream 43397 1569917 ~ 1570479 (+)
G174900 NA non-coding upstream 155224 1396347 ~ 1458652 (+)
G174828 NA non-coding upstream 328893 1241797 ~ 1284983 (+)
G174826 NA non-coding upstream 374677 1238903 ~ 1239199 (+)
G174825 NA non-coding upstream 375937 1237701 ~ 1237939 (+)
G175003 NA non-coding downstream 137663 1751814 ~ 1755182 (+)
G175004 NA non-coding downstream 148643 1762794 ~ 1780869 (+)
G175641 NA non-coding downstream 417395 2031546 ~ 2060079 (+)
G175670 NA non-coding downstream 450021 2064172 ~ 2064536 (+)
G175674 NA non-coding downstream 459277 2073428 ~ 2073640 (+)
CI01000037_00228809_00230442 NA other upstream 1383480 228809 ~ 230730 (+)
CI01000037_01965864_01966433 COA5, CB064 other downstream 351591 1965603 ~ 1966435 (+)
G176346 NA other downstream 1225609 2839760 ~ 2840053 (+)
G176377 NA other downstream 1362711 2976862 ~ 3087968 (+)
CI01000037_04213179_04218057 NA other downstream 2599132 4212907 ~ 4218305 (+)

Expression


Co-expression Network