G175767


Basic Information

Item Value
gene id G175767
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 2302737 ~ 2303537 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU199652
ATCCCTTTAAGTATGTTAAAGCTTATAAATGTCAAAGTCAGCCTATATGTCAACCAAATCATACTTGATATATCATAAAACCCTTTTTTAAGCTAATAAGCTTTTGTTTTTTGAAATGTTGTCACCAGCACACTTGAAACTGATCTCCTCTAACAAGGTCTCCTCTCTTGGGCATGATTTGGTATTTGTCTAATCTTTCTTTTTATAATCCTCAGCTGTGTTTGGAGACATTTCCAAGTGCCATCACACAAACATATCACACGCAATGCTAATTAAAAGTATAGCAGAGGTCTGAAAGATAGATGGAATGCTTTCAGACAACACTAAAAAAGAGATTGCAGACAGGTGGATGGAAGACTAACCCTACTGAGACTTAAACCTTGTGTTCACGCCCCACACTCACAACCTTCACACCCCCATTCCAGCACAATCCATATCCATGGAAAGAGTCTGACCACCCATCATGATTCTATAAATGCCTTTTATCTTCTCCATAAATGCTTTAAGAGGGACTTATAGCTGTAATAGTCTTTATAGGGTGTCATATACAATGGCTATGGTAACCTGTTAACACAACACCAAGCCACTGTGAGGCGAATTCTTTACTGTTGCAGAGGTTTGATAGTAGATTAAAAATATTGTGTTGAGTATATGTATATTATTATTTTTTATTTTACTTTTATTTTTTGGAAGAAAATAATACTTTTATTAATCAAGGATGCATAAAATTGAATAAAATGGACAGTAAAGACATTTATAATATTACAAAAGATTTATATTTTAAATAAATGGTGTTCTTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU199652 True 801 lncRNA 0.33 1 2302737 2303537

Neighbor

gene id symbol gene type direction distance location
CI01000037_02282458_02287205 NA coding upstream 15452 2281347 ~ 2287285 (+)
CI01000037_02279319_02280446 GPR45 coding upstream 21981 2279158 ~ 2280756 (+)
CI01000037_02248789_02250329 POU3F3 coding upstream 51616 2248594 ~ 2251121 (+)
CI01000037_02087502_02094770 NA coding upstream 207669 2087502 ~ 2095068 (+)
CI01000037_02065346_02075634 NA coding upstream 226453 2065276 ~ 2076284 (+)
CI01000037_02334480_02338932 NA coding downstream 27927 2331464 ~ 2338989 (+)
CI01000037_02378066_02392175 NCK2A, NCK2 coding downstream 74529 2378066 ~ 2392871 (+)
CI01000037_02405252_02406221 NA coding downstream 101246 2404783 ~ 2406437 (+)
CI01000037_02414352_02418569 C6H2ORF40, ECRG4A coding downstream 110815 2414352 ~ 2418752 (+)
CI01000037_02527352_02576225 TMTOPS2B coding downstream 222565 2526102 ~ 2576704 (+)
G175630 NA non-coding upstream 2387 2298327 ~ 2300350 (+)
G175628 NA non-coding upstream 6881 2144062 ~ 2295856 (+)
G175693 NA non-coding upstream 159474 2142951 ~ 2143263 (+)
G175689 NA non-coding upstream 162925 2139589 ~ 2139812 (+)
G175674 NA non-coding upstream 229097 2073428 ~ 2073640 (+)
G175769 NA non-coding downstream 8670 2312207 ~ 2312711 (+)
G175777 NA non-coding downstream 109364 2412901 ~ 2413354 (+)
G175858 NA non-coding downstream 302841 2606378 ~ 2609995 (+)
G175871 NA non-coding downstream 321867 2625404 ~ 2626599 (+)
G175875 NA non-coding downstream 332558 2636095 ~ 2636309 (+)
CI01000037_01965864_01966433 COA5, CB064 other upstream 332346 1965603 ~ 1966435 (+)
G174949 NA other upstream 688463 1613876 ~ 1614274 (+)
CI01000037_00987906_00988350 NA other upstream 1312978 987859 ~ 989246 (+)
CI01000037_00228809_00230442 NA other upstream 2072341 228809 ~ 230730 (+)
G176346 NA other downstream 536223 2839760 ~ 2840053 (+)
G176377 NA other downstream 673325 2976862 ~ 3087968 (+)
CI01000037_04213179_04218057 NA other downstream 1909746 4212907 ~ 4218305 (+)

Expression


Co-expression Network