G175777


Basic Information

Item Value
gene id G175777
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 2412901 ~ 2413354 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU199666
TGTAATGATGGGTCGACAGCATGGAGATCCATTTGCAGCTTTTATTAAGAATAGTGTATACACAGGTAAGGGCAGAGGCAGAGACGTAAACGGGAACAGGCAATGGTCGAGGCAGGCAGCAGACAAACGGTATCAGGAAGCAGGCAGAGATCAGGGCAGGCGGCAAACAAACACAGTCCAGTAAACAGGCAAGGATCAAGGCAGGCAGCAGAGAATCACAAGAGATAAACAGTCCAATCGGAAACCAGGAAACAGTCCACAAGAAAACGCTTAGAAATGATCACCGGGGCAAATCAAGACTTCGCAAAGGGTGTGTGTGTGTGTGTGTCTTAAATAGTCCAGGTAATGATCTGCAGGTGTGTGTGGCAATTGGTGATTGGTGCATGTGATTGGAAGGGAGGATTATGGGAAGTGGAGTCCAGGAACTGACAGGAACAGACAGTGATCGTGACAA
>TU199667
TGTAATGATGGGTCGACAGCATGGAGATCCATTTGCAGCTTTTATTAAGAATAGTGTATACACAGGTAAGGGCAGAGGCAGAGACGTAAACGGGAACAGGCAATGGTCGAGGCAGGCAGCAGACAAACGGTATCAGGAAGCAGGCAGAGATCAGGGCAGGCGGCAAACAAACACAGTCCAGTAAACAGGCAAGGATCAAGGCAGGCAGCAGAGAATCACAAGAGATAAACAGTCCAATCGGAAACCAGGAAACAGTCCACAAGAAAACGCTTAGAAATGATCACCGGGGCAAATCAAGACTTCGCAAAGGGTGTGTGTGTGTGTGTGTCTTAAATAGTCCAGGTAATGATCTGCAGGTGTGTGTGGCAATTGGTGATTGGTGCATGTGATTGGAAGGGAGGATTATGGGAAGTGGAGTCCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU199666 False 454 lncRNA 0.48 1 2412901 2413354
TU199667 True 423 lncRNA 0.48 1 2412901 2413323

Neighbor

gene id symbol gene type direction distance location
CI01000037_02405252_02406221 NA coding upstream 6464 2404783 ~ 2406437 (+)
CI01000037_02378066_02392175 NCK2A, NCK2 coding upstream 20030 2378066 ~ 2392871 (+)
CI01000037_02334480_02338932 NA coding upstream 73912 2331464 ~ 2338989 (+)
CI01000037_02282458_02287205 NA coding upstream 125616 2281347 ~ 2287285 (+)
CI01000037_02279319_02280446 GPR45 coding upstream 132145 2279158 ~ 2280756 (+)
CI01000037_02414352_02418569 C6H2ORF40, ECRG4A coding downstream 998 2414352 ~ 2418752 (+)
CI01000037_02527352_02576225 TMTOPS2B coding downstream 112748 2526102 ~ 2576704 (+)
CI01000037_02700254_02707760 GPR89B, GPR89, GPR89A, GPR89B.L coding downstream 286241 2699595 ~ 2708474 (+)
CI01000037_02755842_02769590 NA coding downstream 342488 2755842 ~ 2771166 (+)
CI01000037_02907711_02908412 NA coding downstream 493709 2907063 ~ 2908634 (+)
G175769 NA non-coding upstream 100190 2312207 ~ 2312711 (+)
G175767 NA non-coding upstream 109364 2302737 ~ 2303537 (+)
G175630 NA non-coding upstream 112551 2298327 ~ 2300350 (+)
G175628 NA non-coding upstream 117045 2144062 ~ 2295856 (+)
G175693 NA non-coding upstream 269638 2142951 ~ 2143263 (+)
G175858 NA non-coding downstream 193024 2606378 ~ 2609995 (+)
G175871 NA non-coding downstream 212050 2625404 ~ 2626599 (+)
G175875 NA non-coding downstream 222741 2636095 ~ 2636309 (+)
G175877 NA non-coding downstream 232485 2645839 ~ 2646168 (+)
G175850 NA non-coding downstream 256152 2669506 ~ 2715511 (+)
CI01000037_01965864_01966433 COA5, CB064 other upstream 442510 1965603 ~ 1966435 (+)
G174949 NA other upstream 798627 1613876 ~ 1614274 (+)
CI01000037_00987906_00988350 NA other upstream 1423142 987859 ~ 989246 (+)
CI01000037_00228809_00230442 NA other upstream 2182505 228809 ~ 230730 (+)
G176346 NA other downstream 426406 2839760 ~ 2840053 (+)
G176377 NA other downstream 563508 2976862 ~ 3087968 (+)
CI01000037_04213179_04218057 NA other downstream 1799929 4212907 ~ 4218305 (+)

Expression


Co-expression Network