G175858


Basic Information

Item Value
gene id G175858
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 2606378 ~ 2609995 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU199751
CAAACGTTTAACGATATAATCTGAGGTAATCTAACGAAATATAAACTCTGGAGGGGAGATACATTTCTCAGTTGTTGGCAAGCTTTTGTAAATGCTTAGCACCTTTAATTTAGGCCCAGTCAAGCGCGCTAAAGTAAGATGAAGAATCATTTCTTTACACGTATATGCTTAAAGCCAGCGTGCCGGAGGACGTTCAGGAGGATATTGCTCTTCATCCATTTTGTCACAGGATTGTGAAGCATCCATTTAAATAGCTAATGTGCGAGCCTAGCCAGCACAAATCACAGGACGCTTCAGAGACAGAATCAGCACAGGAGACGGAGGATACGAGCTGCCAGGGGCATAAACATCCTATTTGCTTTTATAAGGTTTATCCGAAGTCAACCGGATTCGGGCCGTATCCAGGTGAGATCGAGGACCTGCGCCTTGACACGACCACAATGCAGCCCTGAAATATCAGCAGAGATTGAGTCAACTAGATCATCCATTGTGAAGGCCTCATCGACATGACAGCCAGTGGCACAGCTCCTCAACAAACCGTCCATACCGGCGTGATGAATACGATCCTCAACTGGATGGAACTGGAATAAATACTTTGAATGTTGCGATCCTATCGGACTTATGATAGCTACCTGAATCGTAACAAAGCACTGTTCACCAGAGGAGAACTGGCCCCCCGACTAAGCCTGGTTTCTCCCAAGGTTTTTTTCTCCATTTTAACACCTGTTTGCCACCTGATGTCACCTGTTGGAGTTCGGGTTCCTTGCCGCTGTCGCCTTTGGCTTGCTTAGTTGGAGACACTTGACATTTGATATTCAACAGTGCTTTGATCTGCCTGCTGGGCAGCCAAAATTATATACCAGTTATCACTGTAAAGCTGCTTTGACACAATCTGCGTTGTAAAAAGCGCTATATAAATAAAGGTGACTTGACTTGAGTATCGATTTCTCGATTTTAATCTATTTTCATTTTTACCAACCGATATTGATTCTTAAATCTTAAGAATCGATTAGTCTAGTCAGTTTTCAGTTGATGAATGAACAGAACATGTAGCGCACCTCCCATCCAATAAATCGCAATAATCTTTGTGCTTTATTACTTTTGATATGAAGCTAAGTCTAAGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU199751 True 1125 lncRNA 0.43 2 2606378 2609995

Neighbor

gene id symbol gene type direction distance location
CI01000037_02527352_02576225 TMTOPS2B coding upstream 29674 2526102 ~ 2576704 (+)
CI01000037_02414352_02418569 C6H2ORF40, ECRG4A coding upstream 187626 2414352 ~ 2418752 (+)
CI01000037_02405252_02406221 NA coding upstream 199941 2404783 ~ 2406437 (+)
CI01000037_02378066_02392175 NCK2A, NCK2 coding upstream 213507 2378066 ~ 2392871 (+)
CI01000037_02334480_02338932 NA coding upstream 267389 2331464 ~ 2338989 (+)
CI01000037_02700254_02707760 GPR89B, GPR89, GPR89A, GPR89B.L coding downstream 89600 2699595 ~ 2708474 (+)
CI01000037_02755842_02769590 NA coding downstream 145847 2755842 ~ 2771166 (+)
CI01000037_02907711_02908412 NA coding downstream 297068 2907063 ~ 2908634 (+)
CI01000037_02909777_02910445 NA coding downstream 299605 2909600 ~ 2910489 (+)
CI01000037_02965392_02966406 FAM155A coding downstream 355397 2965392 ~ 2966433 (+)
G175777 NA non-coding upstream 193024 2412901 ~ 2413354 (+)
G175769 NA non-coding upstream 293667 2312207 ~ 2312711 (+)
G175767 NA non-coding upstream 302841 2302737 ~ 2303537 (+)
G175630 NA non-coding upstream 306028 2298327 ~ 2300350 (+)
G175628 NA non-coding upstream 310522 2144062 ~ 2295856 (+)
G175871 NA non-coding downstream 15409 2625404 ~ 2626599 (+)
G175875 NA non-coding downstream 26100 2636095 ~ 2636309 (+)
G175877 NA non-coding downstream 35844 2645839 ~ 2646168 (+)
G175850 NA non-coding downstream 59511 2669506 ~ 2715511 (+)
G175887 NA non-coding downstream 80356 2690351 ~ 2691089 (+)
CI01000037_01965864_01966433 COA5, CB064 other upstream 635987 1965603 ~ 1966435 (+)
G174949 NA other upstream 992104 1613876 ~ 1614274 (+)
CI01000037_00987906_00988350 NA other upstream 1616619 987859 ~ 989246 (+)
CI01000037_00228809_00230442 NA other upstream 2375982 228809 ~ 230730 (+)
G176346 NA other downstream 229765 2839760 ~ 2840053 (+)
G176377 NA other downstream 366867 2976862 ~ 3087968 (+)
CI01000037_04213179_04218057 NA other downstream 1603288 4212907 ~ 4218305 (+)

Expression


Co-expression Network