Gene
RNA
| Item | Value |
|---|---|
| gene id | G175849 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000037 |
| NCBI id | null |
| chromosome length | 4612320 |
| location | 2715672 ~ 2720970 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU199740 | True | 1698 | lncRNA | 0.44 | 4 | 2715672 | 2720970 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000037_02700254_02707760 | GPR89B, GPR89, GPR89A, GPR89B.L | coding | upstream | 7198 | 2699595 ~ 2708474 (+) |
| CI01000037_02527352_02576225 | TMTOPS2B | coding | upstream | 138968 | 2526102 ~ 2576704 (+) |
| CI01000037_02414352_02418569 | C6H2ORF40, ECRG4A | coding | upstream | 296920 | 2414352 ~ 2418752 (+) |
| CI01000037_02405252_02406221 | NA | coding | upstream | 309235 | 2404783 ~ 2406437 (+) |
| CI01000037_02378066_02392175 | NCK2A, NCK2 | coding | upstream | 322801 | 2378066 ~ 2392871 (+) |
| CI01000037_02755842_02769590 | NA | coding | downstream | 34872 | 2755842 ~ 2771166 (+) |
| CI01000037_02907711_02908412 | NA | coding | downstream | 186093 | 2907063 ~ 2908634 (+) |
| CI01000037_02909777_02910445 | NA | coding | downstream | 188630 | 2909600 ~ 2910489 (+) |
| CI01000037_02965392_02966406 | FAM155A | coding | downstream | 244422 | 2965392 ~ 2966433 (+) |
| CI01000037_03102630_03108094 | NA | coding | downstream | 381660 | 3102630 ~ 3109016 (+) |
| G175850 | NA | non-coding | upstream | 161 | 2669506 ~ 2715511 (+) |
| G175887 | NA | non-coding | upstream | 24583 | 2690351 ~ 2691089 (+) |
| G175877 | NA | non-coding | upstream | 69504 | 2645839 ~ 2646168 (+) |
| G175875 | NA | non-coding | upstream | 79363 | 2636095 ~ 2636309 (+) |
| G175871 | NA | non-coding | upstream | 89073 | 2625404 ~ 2626599 (+) |
| G176273 | NA | non-coding | downstream | 65891 | 2786861 ~ 2787562 (+) |
| G176292 | NA | non-coding | downstream | 76431 | 2797401 ~ 2798084 (+) |
| G176294 | NA | non-coding | downstream | 77242 | 2798212 ~ 2798493 (+) |
| G176297 | NA | non-coding | downstream | 78339 | 2799309 ~ 2799606 (+) |
| G176303 | NA | non-coding | downstream | 84353 | 2805323 ~ 2805550 (+) |
| CI01000037_01965864_01966433 | COA5, CB064 | other | upstream | 745281 | 1965603 ~ 1966435 (+) |
| G174949 | NA | other | upstream | 1101398 | 1613876 ~ 1614274 (+) |
| CI01000037_00987906_00988350 | NA | other | upstream | 1725913 | 987859 ~ 989246 (+) |
| CI01000037_00228809_00230442 | NA | other | upstream | 2485276 | 228809 ~ 230730 (+) |
| G176346 | NA | other | downstream | 118790 | 2839760 ~ 2840053 (+) |
| G176377 | NA | other | downstream | 255892 | 2976862 ~ 3087968 (+) |
| CI01000037_04213179_04218057 | NA | other | downstream | 1492313 | 4212907 ~ 4218305 (+) |
