G176346


Basic Information

Item Value
gene id G176346
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 2839760 ~ 2840053 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU200317
GCTGTCGTTCCAGAAGGAAGCCTCTTCTAAAGATAATGCACAAGAAAGCCCGCAAACAGTTTGCTGAAGACAAGCAGACTAAGGACATGGATTACTGGAACCATGTCCTGTGGTCTGATGAGACCAAGATAAACTTATTTGGTTCAGATGGTGTCAAGCGTGTGTGGCGGCAATCAAGTGAGGAGTACAAAGACAAGTGTATCTTGCCTACAGTCAAGCATGGTGGTGGGAGTGTCATGGTCTGGGGCTGCATGAGTGCTGCCGGCACTGGGGAGCTACAGTTCATTGAGGGAA

Function

NR:

description
zinc transporter BigM103, partial

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU200317 True 294 TUCP 0.49 1 2839760 2840053

Neighbor

gene id symbol gene type direction distance location
CI01000037_02755842_02769590 NA coding upstream 68594 2755842 ~ 2771166 (+)
CI01000037_02700254_02707760 GPR89B, GPR89, GPR89A, GPR89B.L coding upstream 131286 2699595 ~ 2708474 (+)
CI01000037_02527352_02576225 TMTOPS2B coding upstream 263056 2526102 ~ 2576704 (+)
CI01000037_02414352_02418569 C6H2ORF40, ECRG4A coding upstream 421008 2414352 ~ 2418752 (+)
CI01000037_02405252_02406221 NA coding upstream 433323 2404783 ~ 2406437 (+)
CI01000037_02907711_02908412 NA coding downstream 67010 2907063 ~ 2908634 (+)
CI01000037_02909777_02910445 NA coding downstream 69547 2909600 ~ 2910489 (+)
CI01000037_02965392_02966406 FAM155A coding downstream 125339 2965392 ~ 2966433 (+)
CI01000037_03102630_03108094 NA coding downstream 262577 3102630 ~ 3109016 (+)
CI01000037_03120937_03121997 ABHD13 coding downstream 280884 3120937 ~ 3122022 (+)
G176328 NA non-coding upstream 13453 2825982 ~ 2826307 (+)
G176323 NA non-coding upstream 16658 2822713 ~ 2823102 (+)
G176303 NA non-coding upstream 34210 2805323 ~ 2805550 (+)
G176297 NA non-coding upstream 40154 2799309 ~ 2799606 (+)
G176294 NA non-coding upstream 41267 2798212 ~ 2798493 (+)
G176355 NA non-coding downstream 9556 2849609 ~ 2849926 (+)
G176357 NA non-coding downstream 12325 2852378 ~ 2852726 (+)
G176361 NA non-coding downstream 22971 2863024 ~ 2863369 (+)
G176466 NA non-coding downstream 629449 3469502 ~ 3469710 (+)
G176472 NA non-coding downstream 637855 3477908 ~ 3478177 (+)
CI01000037_01965864_01966433 COA5, CB064 other upstream 869369 1965603 ~ 1966435 (+)
G174949 NA other upstream 1225486 1613876 ~ 1614274 (+)
CI01000037_00987906_00988350 NA other upstream 1850001 987859 ~ 989246 (+)
CI01000037_00228809_00230442 NA other upstream 2609364 228809 ~ 230730 (+)
G176377 NA other downstream 136809 2976862 ~ 3087968 (+)
CI01000037_04213179_04218057 NA other downstream 1373230 4212907 ~ 4218305 (+)

Expression


Co-expression Network