XLOC_000912 (dcun1d2b)


Basic Information

Item Value
gene id XLOC_000912
gene name dcun1d2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 208181 ~ 214911 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001451
ACACACCGCGACTCCCGAACCGGAGAGAGAGACGGAGACCCGCTGCTCTGAGAGAAACAACCGGAGAGAGAGACACTCGGAGCAGGAGAAGATCCGTCATTTGATCCTGCAGAAATTAACCCATCTGTTCTGCCTGACCCACAATGACTGCAGCCTGAAGACAGAAAAGCTCAGAGACTCCATGAAAACAGCAGTGGACCGGAGGAAGCTGGACCTGCTCTACAGCCGCTACAAAGATCCACAGGATGAGAATAAGATCGGTGTGGACGGGATCCAGCAGTTCTGTGACGACCTCATGCTGGATCCGGCTAGCGTTAGCGTCCTCATCGTAGCCTGGAAGTTCAGAGCCGCGACGCAGTGCGAGTTCAGTCGGCAGGAGTTCCTGGACGGCATGACGGACCTCGgTTGTGACAGTCCAGAGAAGCTGAAGAGTCTTTTACCCAGACTGGAGCAGGAGCTGAAGGATTCTGGGAAATTCAGAGACTTCTACCGCTTCACCTTCAGCTTCGCCAAGAGTCCCGGACAGAAGTGTTTAGatCTGGAGATGGCGGTGGCCTACTGGAACCTCATTCTCAGTGGACGCTTCAAGTTTCTGGGCCTGTGGAACACGTTCCTCCTGGAGCATCATAAGAAGTCCATCCCTAAGGACACCTGGAACCTGCTGCTGGACTTCGGGAACATGATCGCGGACGACATGTCAAACTATGACGAGGAGGGTGCGTGGCCGGTGCTCATCGATGATTTTGTGGAGTTTGCTCGGCCGATCGTTACAGCAGAAAACCTCCAGACTCTATAATGAGCGCTGACAAGAGGACGAAACAGATAAATGGAGAATGGACATTACGATAGCGCTCTACAATAACAGCACAGGGATAATGATGgactaatatgtaaattaaacattaatatattatgaactaatgatgagttgaGGCATGTACTAATCaggaactaactttaactacatcATGAGTGAATAATGCCTAgattaattacttgttagtacatgtcaGGTAATCGAAATATTAATTAAGACTTTAGTTTAAGCTAATTGTCATGACATAAACATACtctaacagctcatgagttcatgtcaGCTACATTTAGCTTGAACTAAAGtgttaactaatatattaattaataaacacaataagtAATTAAGCTAGCCATTTCTCTCTCATGAACTCATGTTGTAGATAAAGTTAGTTCCTGATTAACTCATCATTTGTTCATTATAAGTGGCGTTTAATTGACATATTAGagcattattgtgtgtgtgtggtcattaTAGAGTGTTAGTGACATTACTAACACAGAGCgacgtgtgtgagtgtgtttgaatgcAGCGTGACAGACAGATACCGAGGGGTTTTGTGCTGTTTTGGAAGTTTTCTAACACAGTGTCTGCTTGTTTGTTCTGTGATCATCAGAGTCGGCAGTTCAGCTCAACATCAgtgttatactgtatatgtaaataaaGATGATTAAC
>TCONS_00002896
TGGAGATGGCGGTGGCCTACTGGAACCTCATTCTCAGTGGACGCTTCAAGTTTCTGGGCCTGTGGAACACGTTCCTCCTGGTACAGCACTCTATAATGACTAGATCCTACAGCTATCAACGACTGCATGCTCCTATTTTCATTATCATTTGAATATTACACACACTTTAGCAGTAgagaaggatgtaaacaacaccTTTATGCACTGCACCCGATGTCACGCGCTCCAGCACAAAGACCATTGCTACAGTGGTTACCTAGCAACATAAGAAACGCAGTGCACTGTTTCCTCTAGTCAACAAAAGGGCAGTGTGTTGCTCCAGCGTTGACATGTCGTATCTAATCTCCTGTTAAATACACTGGGTGTTAACGTCAGTGATGTGAGGCTGGAGTAGTGTTATATGACAGCTGAACTGATGAGGGTTTTGCTTCTCCTTCATCTTGTTTCTGTAAAGGAGCATCATAAGAAGTCCATCCCTAAGGACACCTGGAACCTGCTGCTGGACTTCGGGAACATGATCGCGGACGACATGTCAAACTATGACGAGGAGGGTGCGTGGCCGGTGCTCATCGATGATTTTGTGGAGTTTGCTCGGCCGATCGTTACAGCAGAAAACCTCCAGACTCTATAATGAGCGCTGACAAGAGGACGAAACAGATAAATGGAGAATGGACATTACGATAGCGCTCTACAATAACAGCACAGGGATAATGATGgactaatatgtaa

Function

symbol description
dcun1d2b Predicted to enable cullin family protein binding activity; ubiquitin conjugating enzyme binding activity; and ubiquitin-like protein binding activity. Predicted to be involved in positive regulation of ubiquitin-protein transferase activity and protein neddylation. Predicted to be part of ubiquitin ligase complex. Orthologous to human DCUN1D2 (defective in cullin neddylation 1 domain containing 2).

GO:

id name namespace
GO:0045116 protein neddylation biological_process
GO:0051443 positive regulation of ubiquitin-protein transferase activity biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0097602 cullin family protein binding molecular_function
GO:0031624 ubiquitin conjugating enzyme binding molecular_function
GO:0032182 ubiquitin-like protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040625-171 Predicted to enable cullin family protein binding activity; ubiquitin conjugating enzyme binding activity; and ubiquitin-like protein binding activity. Predicted to be involved in positive regulation of ubiquitin-protein transferase activity and protein neddylation. Predicted to be part of ubiquitin ligase complex. Orthologous to human DCUN1D2 (defective in cullin neddylation 1 domain containing 2).

Ensembl:

ensembl_id ENSDARG00000041592

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001451 False 1489 mRNA 0.45 8 208181 214911
TCONS_00002896 True 729 lncRNA 0.46 2 209129 210813

Neighbor

gene id symbol gene type direction distance location
XLOC_000910 FO681286.1 coding downstream 1973 160302 ~ 206208 (-)
XLOC_000911 grtp1a coding downstream 16148 184915 ~ 192033 (-)
XLOC_000909 pcid2 coding downstream 50618 152007 ~ 157563 (-)
XLOC_000907 FP067451.1 coding downstream 60335 108285 ~ 147846 (-)
XLOC_000908 NA coding downstream 66062 141289 ~ 142119 (-)
XLOC_000913 gas6 coding upstream 97873 312784 ~ 338445 (-)
XLOC_000914 pros1 coding upstream 128381 343292 ~ 354166 (-)
XLOC_000915 rasa3 coding upstream 142607 357518 ~ 411331 (-)
XLOC_000916 METTL21C coding upstream 239404 454315 ~ 462165 (-)
XLOC_000917 zgc:92518 coding upstream 251869 466780 ~ 471925 (-)
XLOC_000927 NA non-coding upstream 563664 778575 ~ 779614 (-)
XLOC_000929 NA non-coding upstream 791026 1005937 ~ 1014866 (-)
XLOC_000930 CU611053.1 non-coding upstream 836030 1050941 ~ 1051057 (-)
XLOC_000931 NA non-coding upstream 929051 1143962 ~ 1253194 (-)
XLOC_000932 NA non-coding upstream 1076264 1291175 ~ 1315753 (-)

Expression


Co-expression Network