CI01000039_08214054_08244061 (MINK1)


Basic Information

Item Value
gene id CI01000039_08214054_08244061
gene name MINK1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 8214037 ~ 8244061 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000039_08214054_08244061.mRNA
GACCCAGCAGGAATCTTTGAGCTGGTGGAAGTCGTGGGCAATGGCACCTACGGACAAGTGTACAAGGGTCGTCATGTTAAGACGGGTCAGCTGGCGGCCATAAAGGTCATGGATGTGACTGAGGAAGAGGAGGAGGAGATTAAAGCTGAGATTAACATGCTGAAGAAGTACAGTCACCATAGAAACATTGCCACCTACTACGGAGCCTTCGTCAAGAAGAGTCCGCCTGGACACGATGACCAGCTCTGGGGTCTGTCTCACCTCCATACTCACAAAGTCATCCACAGAGACATCAAGGGACAGAATGTACTGCTTACAGAGAATGCAGAGGTTAAACTCGTGGATTTTGGGGTGAGCGCACAGTTGGATCGTACAGTCGGCAGAAGAAACACTTTCATTGGCACTCCCTACTGGATGGCCCCAGAAGTCATTGCCTGTGATGAGAATCCTGACTCCACATATGATTACAGGAGTGATATCTGGTCTTTGGGAATCACCGCTATAGAGATGGCTGAAGGAGCACCGCCGTTGTGTGACATGCATCCTATGCGAGCTTTGTTCCTTATCCCACGGAACCCTCCTCCTAAACTGAAGTCCAAGAAATGGTCTAAGAAGTTTATTGACTTCATCGAGGGTTGTCTGGTGAAGTCATATCCAAGTCGTCCATCCACAGAACAGCTCCTGAAGCACTCGTTCATCAGAGACCAGCCCACTGAGAGACAGGTCCGCATCCAGCTCAAAGATCACATCGACCGCACACGCAAGAAACGCGGCGAAAAAGAGGAGACTGAATACGAGTACAGCGGTAGTGATGAAGAGGATGAGAACAGAGGAGATGAGAGAGAATCCAGCTCTATTTTGAATGTTCCTGGTGAGTCGACATTGCGGAGGGATTTCCTGCGGCTGCAGCAAGAGAATAAGGAGCGTTCAGAGGCCTTAAAACGACAGCAGGCGCAGCTCGCCGCTCAGCGCAGAGACCCTGAGGAGCACAAACGCCAGCTGCTGCATGACCGGCAGAAACGGATAGAGGAGCAGAAAGAACAGAGGCGTCGCTTAGAGGAGGAATATAAGCGTAAACAGCTGGAGGAGCAGAGACAGTCGGAGAGACTTCAGAGACAGCTGCAGCAGGAGCACGCGTACCTCGTCTCACTGCAGCAGCAGCAGCAACAAGACAAGAAACCACAGATGTACCACTACAGCAAGAACCTAGAGAACAACAAACCAGCCTGGGCTAGAGAGGTTGAGGAGCGCAGTAAACTGAACAGACAGGGCTCTCCCAAAATCTGCACTACAGTCTCTGACACCAACATCCAGTCCCGTTCAGAATCTATCAGCCAATCAGGAGCTTCACAGACTCCACCTATGCAGAGACCTGTAGAACCACAGGGTGGGCAAGGAAAGTTCCAGATGGCCCACCTGGTGCCGTTAAAACCATATGCCGCTCCTGTCCCTCGCTCTCAGTCTCTTTGCGATCAGCCCACTAAGACCATGTCCGCCTTCCCCACCCAGGATCCCTCTCCCACACCCACACCTCGTCCTCTACACTCCAGAGAACTAGTCCGTCAAAACTCTGACCCCACCTCAGAGACCCCCGCCCCTCAGTCTCGACCAATGAGAGATGACCGGGGACCCTGGATCCGTCTTCCTGAGATTGAACAACCTCCTAAAATTCCTCAGAGAACAGCCTCCATAGCCACTGCACTGAACACAAATCTCTCCTCCGGTATCAGGCACCCAGTCCGAGCAAGTAATCCTGATCTGAGTCGCAATGAGCGCTGGGAGAGAGGAGACAGCATGAGCATCATGTCCAACCTGCCACAGACCGGCTCTCTCGAGAGACACCGCATACTCAGCTCGTCCAAGATGGATTCCTCCCCCACCCTCTCTCATGACGGCCGACACAAACCAGGAGAATCCCGAACCTCATCAAGGCCCAGCAGGCCAGCGAGCTATAAGAGAGCAATAGGAGAGGACCATGGCCTGTACTCTAAGGAGCGGGCAGAGGAGCAGCCGCGACCCCCGGTGAAGGCTAATGACTACTCCTCTTCCTCAGAAAGCAGTGAAAGCAGTGAAGAGAGTGAGAGTGGAGAGGGAGCAGAAGAGGAAAGCCCTACTGACCGCCCACGTGATGCAGATTCTGACTCTGTAAACACTATGGTGGTCCATGAGGAGGAGGAAGGTGAAGGAGGAGATGAAGAACGTGCTGGAGGATATGGAGACCAAACCATGCTTGTACAGAGGACCCCAGAGAAGCGTAGTCATAATGGATACACCAACCTGCCTGATGTGGTTCAGCCCTCCCACTCTCCCACGGACTCGGCCTCCCACTCTTCTCCTGGGAAAGACTCTGCCTATGATTATCAGTCCAGGGGATTGGTGAAGGCCTCTGGAAAGTCCTCTTTTACTACTTTTGTGGACCTAGGAATGTACCAACCATCAGGGGGCACAGGAGATAACATGTCTGTTGGAGGTCTGGGCTCTCGTTTTGAGCAGCTGAAGCTGGAGGTGAGGAAAGGCTCTATGGTCAATGTCAATCCCACCAACACTCGTCCAGTTAGTGACACTCCTGAAATCCGCAAATACAAGAAGAGATTCAACTCTGAGATACTCTGTGCTGCTCTCTGGGATCTCTTTTCCAAACACGTCTTGCTGTCATCAGCTTGTCACTTGGCAGTCAAAAGTTATTTACAGCATTTTGCACAATGTGTGAATCTGCTGGTAGGGACAGAGAACGGTCTGAAGCTGCTGGATCGAAGTGGCCAGGGTAAAGTTTATCCACTGATCAACTCACGCAGGTTTCAGCAGATGGACGTTCTGGAGGGACTGAACCTCCTCATCACTATATCAGGCAAGAAGAATAAGGTGCGTGTGTATTATCTGGCCTGGCTGAGGAATAAAATCCTCCATAATGACCCAGAGGTGGAGAAGAAACAGGGCTGGACCACTGTAGGGGAAATGGAGGGCTGTGTCCACTACAAAGTGGTGAAATATGAAAGGATTAAGTTTCTGGTTATTGCTCTGAAGAATGCGGTGGAGGTTTACGCCTGGGCTCCCAAACCTTACCACAAATTCATGGCCTTCAAGTCATTTGGAGACCTGCCACATAGGCCTCTGTTGGTTGACCTCACAGTGGAAGAGGGTCAGAGGTTAAAAGTCATCTATGGGTCATGTGCTGGCTTCCATGCCATTGACGTCGACTCTGGAAACAACTATGACATCTACATTCCTGTACATATCCAGTCACAGGTGATTCCTCACGCCATTGTATTCCTGCCCAATTCAGATGGGATGGAGATGCTGTTGTGTTATGAGGATGAGGGTGTTTATGTCAACACGTACGGACGCATCATTAAAGATGTTGTGCTGCAGTGGGGAGAAATGCCCACATCAGTGGCCCACATTTGCTCTAATCAGATTATGGGCTGGGGAGAAAAAGCCATTGAGATCCGTTCTGTTGAGACGGGACACCTTGATGGAGTCTTCATGCACAAGAGAGCTCAGAGGCTTAAGTTCCTGTGTGAAAGAAATGACAAGGTGTTTTTTGCGTCAGTACGTTCTGGCGGCAGCAGTCAGGTCTACTTTATGACCCTCAACAGAAACTGCATTATGAATTGGTGAAAGAGCTGCCACATAAA

Function

symbol description
mink1 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in several processes, including MAPK cascade; actin cytoskeleton reorganization; and activation of protein kinase activity. Predicted to be active in cytoplasm. Orthologous to human MINK1 (misshapen like kinase 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K04413 MINK; misshapen/NIK-related kinase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000039_08214054_08244061.mRNA True 3635 mRNA 0.51 29 8214037 8244061

Neighbor

gene id symbol gene type direction distance location
CI01000039_08189467_08193070 NA coding downstream 20967 8189282 ~ 8193070 (-)
CI01000039_08175148_08187608 SLC12A9 coding downstream 26429 8174983 ~ 8187608 (-)
CI01000039_08160613_08163045 NA coding downstream 50992 8160480 ~ 8163045 (-)
CI01000039_08131887_08142840 GC3, OLGC3, GUCY2D, OLGC5, GUCY2F coding downstream 68925 8130840 ~ 8145112 (-)
CI01000039_08127858_08129554 NA coding downstream 84348 8127613 ~ 8129689 (-)
CI01000039_08253442_08273324 PLD2 coding upstream 9255 8253316 ~ 8273324 (-)
CI01000039_08280981_08287465 CHRNE coding upstream 36866 8280927 ~ 8287465 (-)
CI01000039_08306377_08310855 PXMP2 coding upstream 61847 8305908 ~ 8310855 (-)
CI01000039_08311824_08317719 USP30 coding upstream 67009 8311070 ~ 8317719 (-)
CI01000039_08333043_08344467 DAO, DAO.3, DAO.2, DAO.1 coding upstream 88855 8332916 ~ 8345115 (-)
G183244 NA non-coding downstream 5631 8207049 ~ 8208406 (-)
G183273 NA non-coding downstream 9252 8201837 ~ 8204785 (-)
G183355 NA non-coding downstream 13997 8199813 ~ 8200040 (-)
G183354 NA non-coding downstream 14268 8199280 ~ 8199769 (-)
G183353 NA non-coding downstream 15171 8198561 ~ 8198866 (-)
G183360 NA non-coding upstream 77950 8322011 ~ 8322230 (-)
G183361 NA non-coding upstream 78214 8322275 ~ 8322583 (-)
G183362 NA non-coding upstream 79426 8323487 ~ 8323696 (-)
G183260 NA non-coding upstream 93798 8337859 ~ 8338716 (-)
G183261 NA other downstream 238992 7972116 ~ 7975045 (-)
CI01000039_07134422_07137732 NA other downstream 1076270 7134422 ~ 7137767 (-)
CI01000039_06647926_06651530 NA other downstream 1565461 6646544 ~ 6653449 (-)
G182827 NA other downstream 1578837 6634547 ~ 6635200 (-)
G182771 NA other downstream 1705604 6507955 ~ 6508433 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014500 LOC101071565 coding CM030128.1 CM030128.1 15823276 ~ 15870879 (+)