CI01000039_08306377_08310855 (PXMP2)


Basic Information

Item Value
gene id CI01000039_08306377_08310855
gene name PXMP2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 8305908 ~ 8310855 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000039_08306377_08310855.mRNA
CCCCTGTCATCATTCATTTTCATTATTTAAAAATTCAATCAATATTCTGCCTAATATTTCCACTTGTGAGAACGAGAGTCATGCAGCTTTGACCGAATGTTCTATTCCTTTGAAACTTTTTATCACAGGTCCACTCAGTCATTACTTCTACCATCTCCTGGAGGTGCTTTTGCCAACCACTGTCCCATACTGCCTGATCAAGCGCCTTCTGCTGGAACGTCTCATATTCGCCCCTGCTTTCCTCTTGCTCTTCTATGTGGTTATGAATGCTTTGGAGGGCAAGACAATCACAGATGTTCAAAACAAACTTAAAACAAGTTACTGGCCTGCAATGAAGATGAACTGGAAGGTTTGGACCCCGTTTCAGTTTATCAACATCAACTATATACCGGTGCAGGCAAGTATAAGAGCATGACACCAATTCCTCTCTTTCAGATTGCATAAGGGATCTCTGATCCATTATCTTACTTTCTTTTGCTCTTTACACAGTTTCGAGTGCTGTTTGCCAACCTGGTTGCCTTATTCTGGTATGCCTATCTAGCATCTGTCAGGAAATGAAACCACAAAACCAGCTACAATGGGCATAGGTTGGTTTAAGATGAATCCAGTTTGTGCCTTTAAAGGACTGATATGTGTATAAGAGATGTTTTAAATGTCTTCCAGGACAACTGAAAGGGAATATTGGTCGGTTTCTGTAAAATAACTGTGATGTAGATCAGTATTGAGATTGTACTGCTACTTCCACTGACTGTTATTGAATTATTGCTCTGATTTGAAACATTTTAGAAAAAAATCTGCCCCGAGATTCATTATGCTCATACTGAGTGTCTTTCTACTGCTTGTGGAGGCACTGACAATGATTGTGTTGTATTTGATTAATTAAA

Function

symbol description
pxmp2 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Orthologous to human PXMP2 (peroxisomal membrane protein 2).

GO:      GO:0043234, GO:0016021, GO:0005778

KEGG:

id description
K13347 PXMP2, PMP22; peroxisomal membrane protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000039_08306377_08310855.mRNA True 884 mRNA 0.39 3 8305908 8310855

Neighbor

gene id symbol gene type direction distance location
CI01000039_08280981_08287465 CHRNE coding downstream 18443 8280927 ~ 8287465 (-)
CI01000039_08253442_08273324 PLD2 coding downstream 32584 8253316 ~ 8273324 (-)
CI01000039_08214054_08244061 MINK1 coding downstream 61847 8214037 ~ 8244061 (-)
CI01000039_08189467_08193070 NA coding downstream 112838 8189282 ~ 8193070 (-)
CI01000039_08175148_08187608 SLC12A9 coding downstream 118300 8174983 ~ 8187608 (-)
CI01000039_08311824_08317719 USP30 coding upstream 215 8311070 ~ 8317719 (-)
CI01000039_08333043_08344467 DAO, DAO.3, DAO.2, DAO.1 coding upstream 22061 8332916 ~ 8345115 (-)
CI01000039_08346275_08348626 DAO.3, DAO.2, DAO.1 coding upstream 35238 8346093 ~ 8348626 (-)
G183244 NA non-coding downstream 97502 8207049 ~ 8208406 (-)
G183273 NA non-coding downstream 101123 8201837 ~ 8204785 (-)
G183355 NA non-coding downstream 105868 8199813 ~ 8200040 (-)
G183354 NA non-coding downstream 106139 8199280 ~ 8199769 (-)
G183353 NA non-coding downstream 107042 8198561 ~ 8198866 (-)
G183360 NA non-coding upstream 11156 8322011 ~ 8322230 (-)
G183361 NA non-coding upstream 11420 8322275 ~ 8322583 (-)
G183362 NA non-coding upstream 12632 8323487 ~ 8323696 (-)
G183260 NA non-coding upstream 27004 8337859 ~ 8338716 (-)
G183261 NA other downstream 330863 7972116 ~ 7975045 (-)
CI01000039_07134422_07137732 NA other downstream 1168141 7134422 ~ 7137767 (-)
CI01000039_06647926_06651530 NA other downstream 1657332 6646544 ~ 6653449 (-)
G182827 NA other downstream 1670708 6634547 ~ 6635200 (-)
G182771 NA other downstream 1797475 6507955 ~ 6508433 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030962 pxmp2 coding NC_007116.7 CM002889.2 20115774 ~ 20123002 (-)