XLOC_000915 (rasa3)


Basic Information

Item Value
gene id XLOC_000915
gene name rasa3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 357518 ~ 411331 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001456
CGCGCGCTGGAGTACTGAGACCGACGGAGAGTCTCCACAGCGGCGGAGAACGGACGGAGAAGCGGAAAACATCTGGAGCTCGAGCATGGCGGTCGAAGAAGAAGGGCTTCGGGTTTTCCAGAGCGTCAAAATTAAAATCGGTGAAGCCAAGAACATCCCTCCGTATCCAGGACCCAATAAAATGCGGGATTGTTACTGTACTGTAAACTTGGACCAAGAGGAGGTGTTCCGAACCAAAACCATAGAGAAGTCTTTAtgTCCATTCTACGGCGAGGACTTTTACTGTGAAATCCCGCGCAGTTTCCGCCACCTGTCCTTCTACATCTTCGACAGAGACGTGTTCAGGAGGGACTCCAGCATCGGTAAAGTGGCTGTCAAGAAGGAAGACCTGCAGAAGTACCATGGTAAAGATCACTGGTTCCCGCTGCAGCCGGTCTGTGCAGACTCAGAGGTGCAGGGGAAGGTTCACCTGGAGCTGCGTCTCAGTGAGCTCATCACAGACAGCGGCGGCCTCTGCCACAAGCTGGCAACACGGGTTTTGGAGTGTCAGGATCTGCCGATAGTCAATGGTCAGTGTGACCCGTACGCAGCCGTGTCATTACTGggcccttcaaggtctGAGGCCAAGAAGACGAAGGTGAAGCGAAAAAACAACAATCCTCAGTTCGACGAGATCTTCTTCTTCGAGGTGACGAAACCTCTGAGCTTCACTAAACGACAGTTCGACGTGGAGGAAGATGATGTGGACAAGCTCGCActcaaGGTGGACCTGTGGAACGCCAGTAACCTGAAGTTTGGCGATGAGTTTCTGGGAGAGGTACGGGTGCCGCTGAAGGTGCTGGGACAGGCGGGTGTTCACGATGCATGGTACTTCCTGCAGCCCAGAGATAACGGCCATAAGTCAGTGAAGGCGGATGAGCTGGGCTCGCTGAGACTCAACATCGTTTACACGGAGGACCACGTGTTCCCGACGGAGCATTACAACCCGCTGCGAGACCTGCTTCTGCAGTCAGCACACGTACagCCGGTGTCAGCGTCTGCGGCTCATATTCTGGGTGAGGTGTGTCGGGAGAAGCAGGAGGCGGCCGTCCCGCTGGTCAGACTCTTCCTGCACTACGGCAAGATCGTGCCTTTCCTCAGTGCCATCGCTCACGCAGAGATCAGCCGCACACAGGACCCCAACACCATATTCAGAGGGAACTCGCTCACGTCCAAGTGCATCGATGAGACTATGAAGCTGGCGGGGATGCATTACCTGCGCGTCACACTGAAGCCCATCATCGATGAGATCTGCAGCGACCACAAACCCTGCGAGATCGACCCCGTCAAGCTGAAGGAGTCGGAGAATCTGGACACAAACAGGGAAAACCTGCGTCAGTATGTGGACCGCATCTTCAGCGTGATCACCAGCTCCGGCGTCAGCTGCCCGACCGTCATGTGCGACATCTTCTTCTCTCTGCGTGAGTCTGCGGCCTCGCGCTTTCAGGTGGATGCAGATGTTCGCTACACGGCAGTCAGCAGCTTCATCTTCCTGCGCTTCTTTGCTCCTGCAATCCTGTCGCCAAACCTGTTCCACCTGCGGCCGCATCACCCGGATCCGTGCACATCTCGAACCCTGACGCTCATTTCCAAAACCATACAGACTCTGGGGAGCCTGGCCAAGTCCAAATCTGCCAACTTTAAAGAGTCCTACATGGCTGCTTTCTACGACTACTTCAATGAGCAGAAGTACGCAGACGCAGTGAAgaacTTTCTGGATCTGATCTCGTCGTCAGCACGCTGGGACCAGAAGAGCATCGAGACGCCCATCATGCTGAAGGaaggATTCATGATCAAGCGAGCTCAGGGACGAAACCGCTTCGGTCTGAAGAACTTCAAGAAGAGATGGTTTCGCCTCACCAACCACGAGTTCACCTACCATAAAACCAAAGgagAGGGCGCTTTGTGCAGTATCCCTATAGAGAACATCCTGGCTGTAGAGAGACTGGAGGAAGAGTCCTTCAAGATGAAGAATATGTTCCAGGTCATCCAGCCAGAGAGGGCGCTCTACATTCAGGCTAATAACTGTGTGGAGGCCCGAGACTGGATCGACATCCTGACGAAGGTCAGTCAGTGCAACCGCAAGCGCCTGAGCACCTTCCACCCGTCTGCATTCCTCAACGGACACTGGCTCTGCTGTAAGCTGTCTGCGGACACAGCGCCCGGCTGCACGCCCTGCACaggTGGACTTCCTGCCAACATTCAGCTGGATGTGGATGGAGATCGAGAGACGGAGAGGATCTACTCGCTCTACAGCACATACATGTCCAAACTGGTGAAGATGCAGGAGGCGTGTGGCAGTAAGTCAGTGTACGACGGGCCGGAGCAGGAGGAATACTCTACGTTTGTGATCGATGACCCGCAGGAAACCTATAAAACCCTGAGACTCGTGATCTCCGCCGTGCAGACACTGGAGCAGCAGCACACACAGTACAAACGAGACAAGTTCAGGAAAACCAAGTATGGAAGCCAGGAACATCCAATCGGTGATCAGAGCTTCCAGTGCTACATCCGCCAGCAGTCAGAAAGCTCCACCTACTCCATCTGACCACACCCCCTCGCTCTGCACAGGAAATGAGGTGTGATTGACAGGAAGTGTCCGCTGACTCGAGCTAAAGCTGTGGTGTTTAATGCAGTAGCCGAGCGGCGGCGGTCTCGCACTTTACACATGGCGCGCTCTGGGACGATGAGGCTTCGCCACGCGgcgcattttaacattttatgaaGGAATCGTCCTCTAGATGTTTTATAAACGGAGTTCTCCAGGACGTATCCCACAATCCTTTGCTATCACAGGGTTTATAAGTGACTGGATGACGGACCTGCGGCTGAATTTGTTTCTTTATATCAGGAAT

Function

symbol description
rasa3 Predicted to enable GTPase activator activity and metal ion binding activity. Acts upstream of or within blood vessel lumenization; nucleate erythrocyte differentiation; and thrombocyte differentiation. Is expressed in central nervous system. Orthologous to human RASA3 (RAS p21 protein activator 3).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0002574 thrombocyte differentiation biological_process
GO:0046580 negative regulation of Ras protein signal transduction biological_process
GO:0043363 nucleate erythrocyte differentiation biological_process
GO:0043087 regulation of GTPase activity biological_process
GO:0072554 blood vessel lumenization biological_process
GO:0007165 signal transduction biological_process
GO:0005096 GTPase activator activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04013 MAPK signaling pathway - fly
ko04014 Ras signaling pathway

ZFIN:

id description
ZDB-GENE-090313-21 Predicted to enable GTPase activator activity and metal ion binding activity. Acts upstream of or within blood vessel lumenization; nucleate erythrocyte differentiation; and thrombocyte differentiation. Is expressed in central nervous system. Orthologous to human RASA3 (RAS p21 protein activator 3).

Ensembl:

ensembl_id ENSDARG00000063371

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001456 True 2894 mRNA 0.54 24 357518 411331

Neighbor

gene id symbol gene type direction distance location
XLOC_000914 pros1 coding downstream 3352 343292 ~ 354166 (-)
XLOC_000913 gas6 coding downstream 19073 312784 ~ 338445 (-)
XLOC_000912 dcun1d2b coding downstream 142607 208181 ~ 214911 (-)
XLOC_000910 FO681286.1 coding downstream 151310 160302 ~ 206208 (-)
XLOC_000911 grtp1a coding downstream 165485 184915 ~ 192033 (-)
XLOC_000916 METTL21C coding upstream 42984 454315 ~ 462165 (-)
XLOC_000917 zgc:92518 coding upstream 55449 466780 ~ 471925 (-)
XLOC_000918 ercc5 coding upstream 62754 474085 ~ 494280 (-)
XLOC_000919 trmt10c coding upstream 97554 508885 ~ 513786 (-)
XLOC_000920 si:ch73-41e3.7 coding upstream 107522 518853 ~ 524433 (-)
XLOC_000907 FP067451.1 non-coding downstream 209672 108285 ~ 147846 (-)
XLOC_000927 NA non-coding upstream 367244 778575 ~ 779614 (-)
XLOC_000929 NA non-coding upstream 594606 1005937 ~ 1014866 (-)
XLOC_000930 CU611053.1 non-coding upstream 639610 1050941 ~ 1051057 (-)
XLOC_000931 NA non-coding upstream 732631 1143962 ~ 1253194 (-)
XLOC_000932 NA non-coding upstream 879844 1291175 ~ 1315753 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000299_06074050_06097303 RASA3 coding CI01000299 null 6074050 ~ 6097533 (+)