XLOC_000917 (zgc:92518)


Basic Information

Item Value
gene id XLOC_000917
gene name zgc:92518
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 466780 ~ 471925 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001458
tgcagatgtcaGTGCAGACGCTGAACTGGCGGCTGCCATCATGAAGAGACACTTCCGTCCGTCTCTGATAAAGACAGAAGCGTGGGAAGGCTATGAGTTTGCAGACAAGGAGATCAAGATCACGGAGTCGACGGACTGCTATGGGGCCGTTCTGTGGCCCtcgGCCATGGTGCTGTGTCACTTTTTGGACTCTCATCGCGATCAATACAACCTGCTGGACAAGAAGATCATTGAGCTGGGAGCCGGAACCGGACTCGTTACCATAGTAACCAGCCTCCTCGGAGCACAGGTGACCTCCACTGACCTGCCGGACGTCCTGGCCAACCTGAGGCACAATGTGAATCGTAACACCAGAGGGCGCTGCAGACACGAGCCGCAGGTGACAGAGCTGATCTGGGGTCAGCAGCTGGAGGAGCGATTCCCCCGATACACCTGTCAGTATGACTACATCCTAGCGGCGGACGTGGTGTACGGCCACCCATACCTGCAGGAGCTGCTGGAGACCTTCATACACCTGTGCTCTGACCACACCGTCATCCTGTGGGCCATGAGGTTCCGGCTGGACCCCGAGAACCGCTTCGTCCACACCTTTCAGGAGCATTTCCACCTGGAGGAGCTGTACGACCTGCCCAGCCTCAGCATCAAACTCTACAGAGCACATAAACGATAatacgcacacatgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactgattccaCATCAGTTCTGTTTACAACTTGATTTTATCTTTTACACTTTGATTTGTGTTGGATGATTagtattaaatgtatattattttacacTACAAGACTGTTGTATAAACATACTATGGTGTtcggttattgtcagataaaagcacagctaaagtagttccagcaaATTTAGagcagctccatatcactccgctAAATGATTAAAGTTATTTCACAGCTAGAACAATCAGAAATCACATCAGAAcacaagaggaggaggaggagatgtggaggacactagtgctacacacaggagcagAAACCTGACTAATGCACTCTCAGACACAACATCTCAGCAGTGGATCTACCAGAGACCAGGagaagggtctggatgcagacctggtgcagtgcaatctgggctgcatccaatgctttttaatggaattacctaaccccacccctaaccctacccgtcattcacaatgacgtcactcactccatttagtgcattgtgtctgacattgcatcgctgagtgatgcaatctcagcttgcatcataaaggctgcatccagatactattggagacCAGAGGAGAAGAGCAATAATCACCTGCGGGATGGTGGATTATAAGTGAATAATGCACACCTGAGGAGCGACAACACTCCACCTCACCACATCAACACCTCAGCTCTGTGTTATATTCTAATCATTCGACAGTCTGTTGTTAATTATTCTGTTTTACAAGTAAAGTCAATGGGAAGTCAGGAGGAATCAAAGCTGTTTTGTACAGAAGTGTCGTGTTTGGAACAATAAATGGTgaactttca
>TCONS_00001459
cacgcacacactcatggATCAGGATCAGCATGATGAGGatgtcaGTGCAGACGCTGAACTGGCGGCTGCCATCATGAAGAGACACTTCCGTCCGTCTCTGATAAAGACAGAAGCGTGGGAAGGCTATGAGTTTGCAGACAAGGAGATCAAGATCACGGAGTCGACGGACTGCTATGGGGCCGTTCTGTGGCCCtcgGCCATGGTGCTGTGTCACTTTTTGGACTCTCATCGCGATCAATACAACCTGCTGGACAAGAAGATCATTGAGCTGGGAGCCGGAACCGGACTCGTTACCATAGTAACCAGCCTCCTCGGAGCACAGGTGACCTCCACTGACCTGCCGGACGTCCTGGCCAACCTGAGGCACAATGTGAATCGTAACACCAGAGGGCGCTGCAGACACGAGCCGCAGGTGACAGAGCTGATCTGGGGTCAGCAGCTGGAGGAGCGATTCCCCCGATACACCTGTCAGTATGACTACATCCTAGCGGCGGACGTGGTGTACGGCCACCCATACCTGCAGGAGCTGCTGGAGACCTTCATACACCTGTGCTCTGACCACACCGTCATCCTGTGGGCCATGAGGTTCCGGCTGGACCCCGAGAACCGCTTCGTCCACACCTTTCAGGAGCATTTCCACCTGGAGGAGCTGTACGACCTGCCCAGCCTCAGCATCAAACTCTACAGAGCACATAAACGATAatacgcacacatgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactgattccaCATCAGTTCTGTTTACAACTTGATTTTATCTTTTACACTTTGATTTGTGTTGGATGATTagtattaaatgtatattattttacacTACAAGACTGTTGTATAAACATACTATGGTGTtcggttattgtcagataaaagcacagctaaagtagttccagcaaATTTAGagcagctccatatcactccgctAAATGATTAAAGTTATTTCACAGCTAGAACAATCAGAAATCACATCAGAAcacaagaggaggaggaggagatgtggaggacactagtgctacacacaggagcagAAACCTGACTAATGCACTCTCAGACACAACATCTCAGCAGTGGATCTACCAGAGACCAGGagaagggtctggatgcagacctggtgcagtgcaatctgggctgcatccaatgctttttaatggaattacctaaccccacccctaaccctacccgtcattcacaatgacgtcactcactccatttagtgcattgtgtctgacattgcatcgctgagtgatgcaatctcagcttgcatcataaaggctgcatccagatactattggagacCAGAGGAGAAGAGCAATAATCACCTGCGGGATGGTGGATTATAAGTGAATAATGCACACCTGAGGAGCGACAACACTCCACCTCACCACATCAACACCTCAGCTCTGTGTTATATTCTAATCATTCGACAGTCTGTTGTTAATTATTCTGTTTTACAAGTAAAGTCAATGGGAAGTCAGGAGGAATCAAAGCTGTTTTGTACAGAAGTGTCGTGTTTGGAACAATAAATGGTgaactttca
>TCONS_00001460
cacgcacacactcatggATCAGGATCAGCATGATGAGGatgtcaGTGCAGACGCTGAACTGGCGGCTGCCATCATGAAGAGACACTTCCGTCCGTCTCTGATAAAGACAGAAGCGTGGGAAGGCTATGAGTTTGCAGACAAGGAGATCAAGATCACGGAGTCGACGGACTGCTATGGGGCCGTTCTGTGGCCCtcgGCCATGGTGCTGTGTCACTTTTTGGACTCTCATCGCGATCAATACAACCTGCTGGACAAGAAGATCATTGAGCTGGGAGCCGGAACCGGACTCGTTACCATAGTAACCAGCCTCCTCGTTGTATAAATGCTGAATACAGGAGCACAGGTGACCTCCACTGACCTGCCGGACGTCCTGGCCAACCTGAGGCACAATGTGAATCGTAACACCAGAGGGCGCTGCAGACACGAGCCGCAGGTGACAGAGCTGATCTGGGGTCAGCAGCTGGAGGAGCGATTCCCCCGATACACCTGTCAGTATGACTACATCCTAGCGGCGGACGTGGTGTACGGCCACCCATACCTGCAGGAGCTGCTGGAGACCTTCATACACCTGTGCTCTGACCACACCGTCATCCTGTGGGCCATGAGGTTCCGGCTGGACCCCGAGAACCGCTTCGTCCACACCT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000016343

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001458 False 1553 mRNA 0.48 4 466780 470812
TCONS_00001459 False 1586 mRNA 0.48 5 466780 471925
TCONS_00001460 True 644 nonsense_mediated_decay 0.56 5 467743 471925

Neighbor

gene id symbol gene type direction distance location
XLOC_000916 METTL21C coding downstream 4615 454315 ~ 462165 (-)
XLOC_000915 rasa3 coding downstream 55449 357518 ~ 411331 (-)
XLOC_000914 pros1 coding downstream 112614 343292 ~ 354166 (-)
XLOC_000913 gas6 coding downstream 128335 312784 ~ 338445 (-)
XLOC_000912 dcun1d2b coding downstream 251869 208181 ~ 214911 (-)
XLOC_000918 ercc5 coding upstream 2160 474085 ~ 494280 (-)
XLOC_000919 trmt10c coding upstream 36960 508885 ~ 513786 (-)
XLOC_000920 si:ch73-41e3.7 coding upstream 46928 518853 ~ 524433 (-)
XLOC_000921 CU571081.1 coding upstream 80350 552275 ~ 558260 (-)
XLOC_000922 atp5pf coding upstream 138157 610082 ~ 614638 (-)
XLOC_000907 FP067451.1 non-coding downstream 318934 108285 ~ 147846 (-)
XLOC_000927 NA non-coding upstream 306650 778575 ~ 779614 (-)
XLOC_000929 NA non-coding upstream 534012 1005937 ~ 1014866 (-)
XLOC_000930 CU611053.1 non-coding upstream 579016 1050941 ~ 1051057 (-)
XLOC_000931 NA non-coding upstream 672037 1143962 ~ 1253194 (-)
XLOC_000932 NA non-coding upstream 819250 1291175 ~ 1315753 (-)

Expression


Co-expression Network