XLOC_000918 (ercc5)


Basic Information

Item Value
gene id XLOC_000918
gene name ercc5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 474085 ~ 494280 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001461
GGGGAAAACGGAGCGGTTGTTATGTTTTGGCTGCTGTGAGAAGcagAGATGGGAGTTCATGGACTCTGGAAGCTCCTGGAAAGCACCGGAAAACCCATCAATCCAGAAACACTAGAGGGGAAGATCTTAGCTGTCGACATCAGCATCTGGCTGAACCAGGCGGTTAAAGGTGTTCGAGATCGCGATGGGAACGCAGTGCAGAACGCTCACCTGCTCACGCTCTTCCACCGCCTCTGTAAACTACTGTTCTTCCGCATCAGACCTGTGTTTGTGTACGATGGAGACGCGCCGCTGCTCAAGAAGCAGACCCTGGCCGTGCGCAGACAGCGGAGAGAGGAGACGAACCGAGAGTCCAGACAGACCAGTGAGAAGCTCCTGCAGACGTTTCTGAAGAGGCAGGCCATCAGAGCGGCTCTCGGGGAGAACAGtCAGGAGTCAGCGCCCAGCCTGTCGTCAGTGCGGAGAGATGAACATGACGATATTTATGTTCTACCTGCTCTTCCTCCTGAAGACGACAGACAGGAGAgcagTTCAGAAGAGGAGAAAGATGGAGACGAGGCTCTGCACAACTACAGCAGATTCCAGGAGGAGCTGTGTGATAATCCTGACGCTGTGGATATAAACTCAGAGCAGTTCTCCCTCATGCCGCCCGAGATTAAACACGAAATCCTGAAAGAGATGAAGGAGTTCAGCAAGAGACGCCGCACACTGCTACACAAACCTCCagagCGGTCAGGGGAGTTCTCCCAGTATCAGCTGGCTGGTCTCCTGCAGAGGAACAGACTGAACCAGCGGCTGGAGTGTGTGGAGCAGGAGATGAACCAGCGCAGCTCTGGAGGACACACAGACCAGCAGAACACAGAGATCCGCCGGCTGGTGTCTGAGGATTCCTCACACTACATCCTCATCAAAgGGGGTCAGAAGAAGGTCAGTGCTGTGGCCACTCCAGCGGCTCCAGCTCTGTGGTCCAGCTCTCCATGGGAGCCTAAAGGAAGAAATAAAGGAAAACCTGAGCCGTTATGGAGACCCGTGTCTGAAGAAGAAGAGAACAAACCTTCATCCTCATCGTCCAGCCCAGAGGATCAGTCAGCAGGAGCTCCAGCATCTCCTCGAACCCTGCTGGCCATCCAGAGTGCCATGATGGAGTCTGAGGATGAAGATCAGCAGATCCAGGACAGCAGATCCAAGACAAACATCATCCCCAGCAGCTCTAAGACTGAAGAACAGCAGATCCAGAACAGCAGAACCAGGACACACGTCATCACCAGCAGCAGCTCAGAGGATGAAGATCAGCACATCCAGAACAGCAGAGCCAGGACACACATCATCACCAGCAGCTCTGAAGACGAGACGGAGATCAGGAGAACATCAGATCCTGCACCCGGAACCACAGACTTAAAGCTGGAGTCCAGAACGCCGCTCAGTCTCGCTTCTGCAGCTTCTGGAAGTCtagagcagacacacacactgcagcaggATGCGGAGTCTTCAGAGGACGAGTCCAGAAGTTCTGTTATTCTCGATTGTGTGAGATCTGAAACCCAGAGAAAAACACGtgaggaagaagaaaaagaagaagagtcCACAGTAAACCAGATTCTGCAGTTCAGAGACTCCAGAGATCCATCTGAGAAAGAGGAGAGAGAAGATCAGCCGGAGGAAAACAGAGAGAAgagagaagaagaggaggagagcagCGCTgacgAGAGTTTTGTTGAGGTGTCTGATGCAGAGGAACCACCTGAAACAGACGAATCACACATCAACACACACCAAACTGACTATAATACAgaagagaaagaggaggaggtggaggaggaggaagagtcCAGTGCACAGAGCACAGATCAGATTGAAGATGTTGATGAGTCTGTGAATGAAGCTCCGGCTGTCAGTGAGTGGGAGCACATCGACACGgaggagCTGCAGCTGTTGGACAGAGAGCTGCAGGATGAGCAGCAGACTCTGAGAGAGCAgcatcagcagcagcagcgcaGCAGCTCCACCGTCACCGGGCAGATGTGTCAGGAGAGTCAGgagctGCTGCGTTTGTTCGGTGTGCCGTTTATTGTGGCGCCGATGGAGGCTGAAGCTCAGTGCGCCGCTCTGGACCGATTGGACCAAACGCACGGCACCATCACAGACGACAGCGATATCTGGCTGTTCGGCGGACGCCATGTATACAGGAACTTCTTCAACCAGAACAAATACGTGGAGCATTATCAGATTGTGGACATGCAGAACCAGCTGGGTCTGGACAGAAGTAAACTCATCAATCTGGCGTATCTGCTGGGGAGTGATTACACCGAGGGCATTCCTGGAGTGGGATACGTCACTGGGATGGAGATCCTCAATGAGTTTCCTGGAGCCGGTCTGGAGCCGCTCGTCCAGCTCAGtgaATGGTGGACTGAAGCGCAGGAGAATAAGAAACTCTCCGTCAATCCCAAAGACACGAAAGTGAAGAAGAAACTGAGGAACCTGCAGATTCATCCCGGTTTCCCGAACCCGGCCGTGGCTCAGGCGTACCTGCAGCCTAGTGTCGACCAATCAGATGCCTCCTTCAGCTGGGGCCGCCCACATCTGGATCTCATCAAAGAGTTCTGCCAGAGCCGCTTCGGGTGGAGCAGTCGGAAGACGGAGGAGACGCTGCAGCCGGTGCTCAAACAGCTCCAATCACAACAGacgcAGCTGCGCATCGACTCCTTTTTCCGGCTGGAGCAGCAGGATCGTCAGCAGATCCGCAGTGAGCGTCTGCGCAGAGCCGTCATCTGCATGAAGAGGAAGGAGagagaagaggaagaagaggacGAGTCAGTGTCTGCACAGAAACAGGGGCGGAGCGAAGCCGACGAGGCCCCGGGGCCGCTAGCTGGAGGATTCATCAGCTCAGACCCTCAGACCAGCACACAGGGGGGTGGAGCCAAGCAGATCAGGGCGGAGTCGAGCAGCTCCAGCTCAGAGGAGGAGGCGGAGTCCGGGAAGGGTGTCGCTATGGTTACCGCTCGATCTGTGTTTGAGGGGAAAACAAGAGGAAGAGGGAAAAAACTGTtaagaggaagaggaagaagcaaaaacagatgaagatgatgatgaagaactcTTCTGTTTATTACAGTAGATTTTCATCAGCTACAATCATGGAAAATAAAGTGTGCAAGTGAGCGTCTGCCAGTCGAGAACATGATTATGGTTTGTCCGTTTTGttggattattattgtttttcagtCTATTTTTACCATCTTcagataaattaaacaaaaaacattcagaaaaaacaataaaa
>TCONS_00001462
TTGTATATAGAAAGCCATgagctGCTGCGTTTGTTCGGTGTGCCGTTTATTGTGGCGCCGATGGAGGCTGAAGCTCAGTGCGCCGCTCTGGACCGATTGGACCAAACGCACGGCACCATCACAGACGACAGCGATATCTGGCTGTTCGGCGGACGCCATGTATACAGGAACTTCTTCAACCAGAACAAATACGTGGAGCATTATCAGATTGTGGACATGCAGAACCAGCTGGGTCTGGACAGAAGTAAACTCATCAATCTGGCGTATCTGCTGGGGAGTGATTACACCGAGGGCATTCCTGGAGTGGGATACGTCACTGGGATGGAGATCCTCAATGAGTTTCCTGGAGCCGGTCTGGAGCCGCTCGTCCAGCTCAGtgaATGGTGGACTGAAGCGCAGGAGAATAAGAAACTCTCCGTCAATCCCAAAGACACGAAAGTGAAGAAGAAACTGAGGAACCTGCAGATTCATCCCGGTTTCCCGAACCCGGCCGTGGCTCAGGCGTACCTGCAGCCTAGTGTCGACCAATCAGATGCCTCCTTCAGCTGGGGCCGCCCACATCTGGATCTCATCAAAGAATATCCTTCTCCAAAACCTAGCCGCTTCGGGTGGAGCAGTCGGAAGACGGAGGAGACGCTGCAGCCGGTGCTCAAACAGCTCCAATCACAACAGacgcAGCTGCGCATCGACTCCTTTTTCCGGCTGGAGCAGCAGGATCGTCAGCAGATCCGCAGTGAGCGTCTGCGCAGAGCCGTCATCTGCATGAAGAGGAAGGAGagagaagaggaagaagaggacGAGTCAGTGTCTGCACAGAAACAGGGGCGGAGCGAAGCCGACGAGGCCCCGGGGCCGCTAGCTGGAGGATTCATCAGCTCAGACCCTCAGACCAGCACACAGGGGGGTGGAGCCAAGCAGATCAGGGCGGAGTCGAGCAGCTCCAGCTCAGAGGAGGAGGCGGAGTCCGGGAAGGGTGTCGCTATGGTTACCGCTCGATCTGTGTTTGAGGGGAAAACAAGAGGAAGAGGGAAAAAACTGTtaagaggaagaggaagaagcaaaaacagatga
>TCONS_00001463
GTCTTCAGAGGACGAGTCCAGAAGTTCTGTTATTCTCGATTGTGTGAGATCTGAAACCCAGAGAAAAACACGtgaggaagaagaaaaagaagaagagtcCACAGTAAACCAGATTCTGCAGTTCAGAGACTCCAGAGATCCATCTGAGAAAGAGGAGAGAGAAGATCAGCCGGAGGAAAACAGAGAGAAgagagaagaagaggaggagagcagCGCTgacggtacacacacacacacacacacacacatacacacacacacagaatgttGTACAGTGTTTAACAGTGATGGTCTTGAGTGTTTTTGTGTCTGCAGAGAGTTTTGTTGAGGTGTCTGATGCAGAGGAACCACCTGAAACAGACGAATCACACATCAACACACACCAAACTGACTATAATACAgaagagaaagaggaggaggtggaggaggaggaagagtcCAGTGCACAGAGCACAGATCAGATTGAAGATGTTGATGAGTCTGTGAATGAAGCTCCGGCTGTCAGTGAGTGGGAGCACATCGACACGgaggagCTGCAGCTGTTGGACAGAGAGCTGCAGGATGAGCAGCAGACTCTGAGAGAGCAgcatcagcagcagcagcgcaGCAGCTCCACCGTCACCGGGCAGATGTGTCAGGAGAGTCAGgagctGCTGCGTTTGTTCGGTGTGCCGTTTATTGTGGCGCCGATGGAGGCTGAAGCTCAGTGCGCCGCTCTGGACCGATTGGACCAAACGCACGGCACCATCACAGACGACAGCGATATCTGGCTGTTCGGCGGACGCCATGTATACAGGAACTTCTTCAACCAGAACAAATACGTGGAGCATTATCAGATT
>TCONS_00001464
ATGGGAGTTCATGGACTCTGGAAGCTCCTGGAAAGCACCGGAAAACCCATCAATCCAGAAACACTAGAGGGGAAGATCTTAGCTGTCGACATCAGCATCTGGCTGAACCAGGCGGTTAAAGGTGTTCGAGATCGCGATGGGAACGCAGTGCAGAACGCTCACCTGCTCACGCTCTTCCACCGCCTCTGTAAACTACTGTTCTTCCGCATCAGACCTGTGTTTGTGTACGATGGAGACGCGCCGCTGCTCAAGAAGCAGACCCTGGCCGTGCGCAGACAGCGGAGAGAGGAGACGAACCGAGAGTCCAGACAGACCAGTGAGAAGCTCCTGCAGACGTTTCTGAAGAGGCAGGCCATCAGAGCGGCTCTCGGGGAGAACAGtCAGGAGTCAGCGCCCAGCCTGTCGTCAGTGCGGAGAGATGAACATGACGATATTTATGTTCTACCTGCTCTTCCTCCTGAAGACGACAGACAGGAGAgcagTTCAGAAGAGGAGAAAGATGGAGACGAGGCTCTGCACAACTACAGCAGATTCCAGGAGGAGCTGTGTGATAATCCTGACGCTGTGGATATAAACTCAGAGCAGTTCTCCCTCATGCCGCCCGAGATTAAACACGAAATCCTGAAAGAGATGAAGGAGTTCAGCAAGAGACGCCGCACACTGCTACACAAACCTCCagagCGGTCAGGGGAGTTCTCCCAGTATCAGCTGGCTGGTCTCCTGCAGAGGAGTGTGTGGAGCAGGAGATGA

Function

symbol description
ercc5 Predicted to enable endodeoxyribonuclease activity and single-stranded DNA binding activity. Predicted to be involved in nucleotide-excision repair, DNA incision, 3'-to lesion. Predicted to act upstream of or within nucleotide-excision repair. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in cerebrooculofacioskeletal syndrome 3; melanoma; and xeroderma pigmentosum group G. Orthologous to human ERCC5 (ERCC excision repair 5, endonuclease).

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0006295 nucleotide-excision repair, DNA incision, 3'-to lesion biological_process
GO:0005634 nucleus cellular_component
GO:0004518 nuclease activity molecular_function
GO:0004519 endonuclease activity molecular_function
GO:0004520 endodeoxyribonuclease activity molecular_function
GO:0016788 hydrolase activity, acting on ester bonds molecular_function
GO:0003677 DNA binding molecular_function
GO:0003697 single-stranded DNA binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko03420 Nucleotide excision repair
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-050327-28 Predicted to enable endodeoxyribonuclease activity and single-stranded DNA binding activity. Predicted to be involved in nucleotide-excision repair, DNA incision, 3'-to lesion. Predicted to act upstream of or within nucleotide-excision repair. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in cerebrooculofacioskeletal syndrome 3; melanoma; and xeroderma pigmentosum group G. Orthologous to human ERCC5 (ERCC excision repair 5, endonuclease).

Ensembl:

ensembl_id ENSDARG00000023678

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001461 False 3283 mRNA 0.53 17 474085 494280
TCONS_00001462 False 1071 mRNA 0.55 6 474287 481841
TCONS_00001463 False 839 lncRNA 0.50 3 479807 484588
TCONS_00001464 True 750 mRNA 0.54 8 487189 493218

Neighbor

gene id symbol gene type direction distance location
XLOC_000917 zgc:92518 coding downstream 2160 466780 ~ 471925 (-)
XLOC_000916 METTL21C coding downstream 11920 454315 ~ 462165 (-)
XLOC_000915 rasa3 coding downstream 62754 357518 ~ 411331 (-)
XLOC_000914 pros1 coding downstream 119919 343292 ~ 354166 (-)
XLOC_000913 gas6 coding downstream 135640 312784 ~ 338445 (-)
XLOC_000919 trmt10c coding upstream 14605 508885 ~ 513786 (-)
XLOC_000920 si:ch73-41e3.7 coding upstream 24573 518853 ~ 524433 (-)
XLOC_000921 CU571081.1 coding upstream 57995 552275 ~ 558260 (-)
XLOC_000922 atp5pf coding upstream 115802 610082 ~ 614638 (-)
XLOC_000923 appa coding upstream 123340 617620 ~ 656693 (-)
XLOC_000907 FP067451.1 non-coding downstream 326239 108285 ~ 147846 (-)
XLOC_000927 NA non-coding upstream 284295 778575 ~ 779614 (-)
XLOC_000929 NA non-coding upstream 511657 1005937 ~ 1014866 (-)
XLOC_000930 CU611053.1 non-coding upstream 556661 1050941 ~ 1051057 (-)
XLOC_000931 NA non-coding upstream 649682 1143962 ~ 1253194 (-)
XLOC_000932 NA non-coding upstream 796895 1291175 ~ 1315753 (-)

Expression


Co-expression Network