XLOC_000919 (trmt10c)


Basic Information

Item Value
gene id XLOC_000919
gene name trmt10c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 508885 ~ 513786 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001465
AGACATCCACATGACACCAACAGCGCGTGTGTCCTTTTGAGGGTCCTGTAGTGACTTCTGAGTGGACTTGCTGGCCAGCAGCTGATGTGGAACAGAGATTTACTTTAATTAAAGTGTAAATAATGTTGTAGGGGTTGAAGAGGACGGGGGTGGGCGTCACAGTGCTGATTTAATCTGATTTTCTTTCCCCAACACTGATGATGTTTCTGCGCTGGTGTTTCCCGCCGGTCAGAcggatgtgtgtgtgtcagcagatctCCGTCAGGTCCTTCAGCAGCAGCCGGACGCTCCTCAAAGATGACCCACAGCATGAGGAGAAGCTGGATCTGGACATCTGGAAGTCTGTGATGAGAGCTCAAGCTCTGCCGGAAGATCCTCCGCATCTCCAGGACTCGACATCGGCTGCGTCTGTGCTGGAGGCGCACCGAGAGCTGGTGGAGACCTGGCATCAAGCTGGAAAGCTGGTGCCGAAGGTGATCACGGATCAGCAGCTGCAGGAACTCTCCATTCTCACCACTAAATCCTCCAAGAAGAAATACCTCAAATTCCTGGCCATCAAGGAGGCGCAGAAGAACAACGACAAGAGGAAGCAGGAGAAGAAGAGAGCTGAGAGAGAAGCGGGAAAACTCCAGAACAATAatggagaggaggaggaggaggagcgagCCGCAGGCCCCGAGAACACCTTCATGCTGAGGCTCCGCAACAACTCCATCGAGAGCGCACACAACTGGAGGACGGCGCAGGCGATGCGCTTCGACCAGCCGCTGGTCTTCGACATGAGCTACGATCAGCAGATGAGCCGGCATGAGCTGGAGAATACGGTCAGTCAGCTGCTGGAGAGCGAAGGCTTCAACCGGCGGGTTCAGGAGCCGTTTCACCTGCACTTCTGCAACCTGCAGCCGGGGGGAGCGTACCACCGCGAGCTGCTGCGGAGATACGGGGACGAGACGTGGAGACGGCTGCTGATCACACACACCGAGCGCTCGCCGCTGGAGCTGTTCCCGCATCAGGACCTGGTGTACCTCACAGCAGACTCGCGCTCCGTCCTGCGCACGTTCGACCACACCAAGgtGTATATAGTGGGAGCTATGGTGGACCGCAGCATCCGCGTAGGAGCATCGCTTGCTATTGCCAAACGCTTCAGACTGGCCACGGCGCGGCTCCCGCTGGACGAGTATCTGGACTGGGATTGTGGAGCTAAAAATCTGACTCTGGATCAGATGATCCGCATTCTGACCACGGTGAAGCAGACGGGCTGCTGGCAGAAAGCGCTGGAGTTCGTGCCCAAGAGGAAACACAAAGGTTTCCATCAACAAAGCGGCGACAAGAGGAGCCAGAAAAAACACAGAGGAGGAGCAGACAGAGCCCCCTGGTGGAGTCAGCAGAAACAACACCAACAGAAATAATCATGCGCATCGACAGCAATGAGAAGAACTTCAGCAATATTCTGCCTCATGTGctgaaactaaaataataaagcgTGTGTGAGGGCTTCTCTTGCTTCATTTTGATATGTTAATACcaattaaagaaatgcaaaaaGGATTTCAGTGTAAGAAACATGAGGAAGTAATATTGCTGATTCAAATCATTTCAGGCATCCTACATCTTCTGCTTCATGTGGTGAAACTAAAAGCTACAAACAAATCaagactataataaataaaagcctgTATTAGG
>TCONS_00001466
GCGTGTGTCCTTTTGAGGGTCCTGTAGTGACTTCTGAGTGGACTTGCTGGCCAGCAGCTGATGTGGAACAGAGATTTACTTTAATTAAAGTGTAAATAATGTTGTAGGGGTTGAAGAGGACGGGGGTGGGCGTCACAGTGCTGATTTAATCTGATTTTCTTTCCCCAACACTGATGATGTTTCTGCGCTGGTGTTTCCCGCCGGTCAGAcggatgtgtgtgtgtcagcagatctCCGTCAGGTCCTTCAGCAGCAGCCGGACGCTCCTCAAAGATGACCCACAGCAagaggaggaggaggaggagcgagCCGCAGGCCCCGAGAACACCTTCATGCTGAGGCTCCGCAACAACTCCATCGAGAGCGCACACAACTGGAGGACGGCGCAGGCGATGCGCTTCGACCAGCCGCTGGTCTTCGACATGAGCTACGATCAGCAGATGAGCCGGCATGAGCTGGAGAATACGGTCAGTCAGCTGCTGGAGAGCGAAGGCTTCAACCGGCGGGTTCAGGAGCCGTTTCACCTGCACTTCTGCAACCTGCAGCCGGGGGGAGCGTACCACCGCGAGCTGCTGCGGAGATACGGGGACGAGACGTGGAGACGGCTGCTGATCACACACACCGAGCGCTCGCCGCTGGAGCTGTTCCCGCATCAGGACCTGGTGTACCTCACAGCAGACTCGCGCTCCGTCCTGCGCACGTTCGACCACACCAAGgtGTATATAGTGGGAGCTATGGTGGACCGCAGCATCCGCGTAGGAGCATCGCTTGCTATTGCCAAACGCTTCAGACTGGCCACGGCGCGGCTCCCGCTGGACGAGTATCTGGACTGGGATTGTGGAGCTAAAAATCTGACTCTGGATCAGATGATCCGCATTCTGACCACGGTGAAGCAGACGGGCTGCTGGCAGAAAGCGCTGGAGTTCGTGCCCAAGAGGAAACACAAAGGTTTCCATCAACAAAGCGGCGACAAGAGGAGCCAGAAAAAACACAGAGGAGGAGCAGACAGAGCCCCCTGGTGGAGTCAGCAGAAACAACACCAACAGAAATAATCATGCGCATCGACAGCAATGAGAAGAACTTCAGCAATATTCTGCCTCATGTGctgaaactaaaataataaagcgTGTGTGAGGGCT
>TCONS_00001467
GCTGGCCAGCAGCTGATGTGGAACAGAGATTTACTTTAATTAAAGTGTAAATAATGTTGTAGGGGTTGAAGAGGACGGGGGTGGGCGTCACAGTGCTGATTTAATCTGATTTTCTTTCCCCAACACTGATGATGTTTCTGCGCTGGTGTTTCCCGCCGGTCAGAcggatgtgtgtgtgtcagcagatctCCGTCAGGTCCTTCAGCAGCAGCCGGACGCTCCTCAAAGATGACCCACAGCATGAGGAGAAGCTGGATCTGGACATCTGGAAGTCTGTGATGAGAGCTCAAGCTCTGCCGGAAGATCCTCCGCATCTCCAGGACTCGACATCGGCTGCGTCTGTGCTGGAGGCGCACCGAGAGCTGGTGGAGACCTGGCATCAAGCTGGAAAGGTGATGCTACACTTATTATAACCCTTAAATCCCCCTCAGATTGACTCCTCTTTGgtgatgttggtgctgtttttgccccattgacacacacatgcatgtatgtatgtatttctaCACGTATACCTCCACGTGTGCAGCTGGTGCCG

Function

symbol description
trmt10c Predicted to enable tRNA (guanine-N1-)-methyltransferase activity and tRNA binding activity. Predicted to be involved in mitochondrial tRNA processing. Predicted to act upstream of or within methylation and tRNA processing. Predicted to be located in mitochondrial nucleoid. Predicted to be part of mitochondrial ribonuclease P complex. Predicted to be active in nucleoplasm. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 30. Orthologous to human TRMT10C (tRNA methyltransferase 10C, mitochondrial RNase P subunit).

GO:

id name namespace
GO:0090646 mitochondrial tRNA processing biological_process
GO:0008033 tRNA processing biological_process
GO:0030678 mitochondrial ribonuclease P complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0000049 tRNA binding molecular_function
GO:0009019 tRNA (guanine-N1-)-methyltransferase activity molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-041114-12 Predicted to enable tRNA (guanine-N1-)-methyltransferase activity and tRNA binding activity. Predicted to be involved in mitochondrial tRNA processing. Predicted to act upstream of or within methylation and tRNA processing. Predicted to be located in mitochondrial nucleoid. Predicted to be part of mitochondrial ribonuclease P complex. Predicted to be active in nucleoplasm. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 30. Orthologous to human TRMT10C (tRNA methyltransferase 10C, mitochondrial RNase P subunit).

Ensembl:

ensembl_id ENSDARG00000041575

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001465 False 1683 mRNA 0.53 5 508885 513786
TCONS_00001466 False 1139 mRNA 0.56 5 509072 513762
TCONS_00001467 True 538 lncRNA 0.51 2 511771 513717

Neighbor

gene id symbol gene type direction distance location
XLOC_000918 ercc5 coding downstream 14605 474085 ~ 494280 (-)
XLOC_000917 zgc:92518 coding downstream 36960 466780 ~ 471925 (-)
XLOC_000916 METTL21C coding downstream 46720 454315 ~ 462165 (-)
XLOC_000915 rasa3 coding downstream 97554 357518 ~ 411331 (-)
XLOC_000914 pros1 coding downstream 154719 343292 ~ 354166 (-)
XLOC_000920 si:ch73-41e3.7 coding upstream 5067 518853 ~ 524433 (-)
XLOC_000921 CU571081.1 coding upstream 38489 552275 ~ 558260 (-)
XLOC_000922 atp5pf coding upstream 96296 610082 ~ 614638 (-)
XLOC_000923 appa coding upstream 103834 617620 ~ 656693 (-)
XLOC_000924 cyyr1 coding upstream 144619 658405 ~ 669717 (-)
XLOC_000907 FP067451.1 non-coding downstream 361039 108285 ~ 147846 (-)
XLOC_000927 NA non-coding upstream 264789 778575 ~ 779614 (-)
XLOC_000929 NA non-coding upstream 492151 1005937 ~ 1014866 (-)
XLOC_000930 CU611053.1 non-coding upstream 537155 1050941 ~ 1051057 (-)
XLOC_000931 NA non-coding upstream 630176 1143962 ~ 1253194 (-)
XLOC_000932 NA non-coding upstream 777389 1291175 ~ 1315753 (-)

Expression


Co-expression Network