G183261


Basic Information

Item Value
gene id G183261
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 7972116 ~ 7975045 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU208115
GCATTCATTTGATAAAATTTTATTTTCTATGAAAAACAAATCAAGAGCATTAAGGCTGATACCTGTGTGCAAACAGGTGGTGAAGTCATTGACAGCTGTCACAGGACATATAGGTTCTTTAATTACAGTAATTCTGCAGCTCAAAGATGCTGCAGGGTTTGTGGCAGCACTGCTCCACTATGCCTCTCTTCCTTATCAGCTCAGCATGATCTTTAAATGCAAAGTCAGCCACCTCAGTTTCCTGGGCAGATTTAGGAGGAAGGAAACCTGGGAAAACCATAAGAGGGTCAACATCTCTCTTGGGGTTGTAAAAGAAGCCTGTTGGCCCACAGACCAGGTAGAGGGCATCGACGAGATGAGATCCACACAGGTGCTGCGGGGCCCCTGCGTTAGCGTTCACACTGGAGACGGCCAACAGGAACAACAGAGCACCAGCCTGGAGCCACACTGCCATGGTCACACTGACAGAAAAACAGATATATGCCCTTTTACTGATAAAACAAATG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU208115 True 506 TUCP 0.46 2 7972116 7975045

Neighbor

gene id symbol gene type direction distance location
CI01000039_07952703_07961286 NA coding downstream 10097 7952286 ~ 7962019 (-)
CI01000039_07908291_07909766 NA coding downstream 61648 7907904 ~ 7910468 (-)
CI01000039_07781930_07783389 NA coding downstream 188422 7781890 ~ 7783694 (-)
CI01000039_07658015_07658757 NA coding downstream 313064 7657540 ~ 7659052 (-)
CI01000039_07619613_07632295 WDR44 coding downstream 339821 7618880 ~ 7632295 (-)
CI01000039_07987279_07996351 ARHGAP35 coding upstream 12167 7987212 ~ 7996921 (-)
CI01000039_08003424_08011297 NA coding upstream 28365 8003410 ~ 8012533 (-)
CI01000039_08022279_08026193 SCN4BB coding upstream 46854 8021899 ~ 8026193 (-)
CI01000039_08038068_08041738 NA coding upstream 61874 8036919 ~ 8041738 (-)
CI01000039_08062731_08064494 NA coding upstream 87548 8062593 ~ 8064494 (-)
G183255 NA non-coding downstream 6733 7962056 ~ 7965383 (-)
G183319 NA non-coding downstream 49169 7922737 ~ 7922947 (-)
G183277 NA non-coding downstream 51478 7919713 ~ 7920638 (-)
G183316 NA non-coding downstream 73283 7895793 ~ 7898833 (-)
G183314 NA non-coding downstream 76906 7894989 ~ 7895210 (-)
G183328 NA non-coding upstream 518 7975563 ~ 7977048 (-)
G183329 NA non-coding upstream 33779 8008824 ~ 8009050 (-)
G183276 NA non-coding upstream 68986 8044031 ~ 8044365 (-)
G183333 NA non-coding upstream 71686 8046731 ~ 8046988 (-)
CI01000039_07134422_07137732 NA other downstream 834349 7134422 ~ 7137767 (-)
CI01000039_06647926_06651530 NA other downstream 1323540 6646544 ~ 6653449 (-)
G182827 NA other downstream 1336916 6634547 ~ 6635200 (-)
G182771 NA other downstream 1463683 6507955 ~ 6508433 (-)
G182470 NA other downstream 2335352 5636058 ~ 5636764 (-)

Expression


Co-expression Network